Scientific Programmer at the University of Otago. A Carpentries Instructor and Instructor Trainer.
Location: University of Otago
CadzowMurraymurray.cadzow@otago.ac.nzUniversity of OtagoScientific Programmer at the University of Otago. A Carpentries Instructor and Instructor Trainer.["English"]https://orcid.org/0000-0002-2299-4136
Nathan has almost 20 years experience in the field of bioinformatics with expertise in genomics, transcriptomics, system biology, phylogenetics, bioinformatics training, Linux systems administration, pipeline development, high-performance and cloud computing. Nathan has been developing and...
Location: Adelaide, South Australia
Watson-haighNathannathan.watson-haigh@sahmri.comAdelaide, South AustraliaNathan has almost 20 years experience in the field of bioinformatics with expertise in genomics, transcriptomics, system biology, phylogenetics, bioinformatics training, Linux systems administration, pipeline development, high-performance and cloud computing. Nathan has been developing and delivering hands-on bioinformatics training for about 10 years.["English"]https://orcid.org/0000-0002-7935-6151
Based within the Monash Bioinformatics Platform and a certified Carpentries instructor, Nick is also involved with Monash Data Fluency in training and teaching on genomics, bioinformatics and R.
Location: Melbourne, Australia
WongNicknick.wong@monash.eduMelbourne, AustraliaBased within the Monash Bioinformatics Platform and a certified Carpentries instructor, Nick is also involved with Monash Data Fluency in training and teaching on genomics, bioinformatics and R. ["English", "Chinese"]https://research.monash.edu/en/persons/nick-wonghttps://orcid.org/0000-0003-4393-7541
I'm a PhD student at Biomedicine Discovery Institute, Monash University with a strong Bioinformatics background and interest in cancer research. I work as a Bioinformatician with the Monash Bioinformatics Platform, where I work with a variety of biological datasets such as RNA-seq, single-cell...
Location: Clayton, Victoria, Australia
KandhariNitikanitika200492@gmail.comClayton, Victoria, AustraliaI'm a PhD student at Biomedicine Discovery Institute, Monash University with a strong Bioinformatics background and interest in cancer research. I work as a Bioinformatician with the Monash Bioinformatics Platform, where I work with a variety of biological datasets such as RNA-seq, single-cell RNA-seq, ChIP-seq and ATAC-seq.
I love travelling, trekking and trying out different cuisines.["English", "Hindi", "Panjabi; Punjabi"]https://orcid.org/0000-0002-0261-727X
Training lead for ADACS. Certified Carpentries instructor.
Location: Curtin Institute for Data Science, Curtin University, Perth, WA.
HancockPaulpaul.hancock@curtin.edu.auCurtin Institute for Data Science, Curtin University, Perth, WA.Training lead for ADACS. Certified Carpentries instructor.["English"]https://orcid.org/0000-0002-4203-2946
Knows R and some Python. Has developed training matieral on R. Carpentries certified instructor.
Location: Monash University
HarrisonPaulpaul.harrison@monash.eduMonash UniversityKnows R and some Python. Has developed training matieral on R. Carpentries certified instructor.["English"]https://www.monash.edu/researchinfrastructure/bioinformatics/traininghttps://orcid.org/0000-0002-3980-268X
Software Project Coordinator at the Australian Research Data Commons (ARDC) Software Program and Community Manager at the Research Software Alliance (ReSA).
Trainer Summary:
Certified The Carpentries Instructor since 2015 https://carpentries.org/instructors/
and Trainer since 2017...
Location: Brisbane, Australia
MartinezPaula Andreapaula.martinez@ardc.edu.auBrisbane, AustraliaSoftware Project Coordinator at the Australian Research Data Commons (ARDC) Software Program and Community Manager at the Research Software Alliance (ReSA).
Trainer Summary:
Certified The Carpentries Instructor since 2015 https://carpentries.org/instructors/
and Trainer since 2017 https://carpentries.org/trainers/
Certified Open Science Trainer from Foster Open Science since 2018 https://www.fosteropenscience.eu/trainers-directory
Taught for the ELIXIR-EXCELERATE Train-the-Trainer program in 2018 and Galaxy workshops in 2018
Founded and co-organised RLadies Brisbane since 2019
Founded and co-organised UQ-RUG during 2020
["English"]https://orcid.org/0000-0002-8990-1985
I have worked in IT as a developer, software engineer, analyst and project manager for 20+ years. I'm currently working for James Cook University and QCIF as an eResearch Analyst. I primarily instruct the Python and Git training courses but plan on branching out. I'm very interested in ways to...
Location: Townsville, North Queensland
LawreyPaulinepauline.lawrey@jcu.edu.auTownsville, North QueenslandI have worked in IT as a developer, software engineer, analyst and project manager for 20+ years. I'm currently working for James Cook University and QCIF as an eResearch Analyst. I primarily instruct the Python and Git training courses but plan on branching out. I'm very interested in ways to help researchers after that introductory training session and training development.["English"]https://www.qcif.edu.au/support/eresearch-analysts/
Senior Specialist, Data Librarian at University Technology Sydney. Leads the Research Data Team within UTS Library, providing training and advocacy for Research Data Management across the University. Certified Carpentries Instructor.
Location: Dharug & Gundungurra Country (Blue Mountains, NSW)
HamblettRiaria.hamblett@uts.edu.auDharug & Gundungurra Country (Blue Mountains, NSW)Senior Specialist, Data Librarian at University Technology Sydney. Leads the Research Data Team within UTS Library, providing training and advocacy for Research Data Management across the University. Certified Carpentries Instructor. ["English"]https://orcid.org/0000-0002-3822-9631
I am the Skills Development Lead for Planet Research Data Commons and I help co-design training materials, scale training and build skills related communities for the projects within Planet RDC.
Location: Brisbane, Qld Australia
ClemensRobertrob.clemens@ardc.edu.auBrisbane, Qld AustraliaI am the Skills Development Lead for Planet Research Data Commons and I help co-design training materials, scale training and build skills related communities for the projects within Planet RDC.https://ardc.edu.au/planet-research-data-commons/https://orcid.org/0000-0002-1359-5133
WardRogerrward@unimelb.edu.auhttps://ohdsi-australia.org/full_tutorial.pdfFluoroquinolone antibiotics and Aortic Aneurysm or Dissection Tutorial in the OMOP Common Data Model["English"]
Dr Sara King is the Training and Engagement Lead for AARNet. She is focused on outreach within the research sector, developing communities of interest around training, outreach and skills development in eResearch. She is currently working on creating reusable guidance information for Jupyter...
Location: Adelaide, South Australia
KingSarasara.king@aarnet.edu.auAdelaide, South AustraliaDr Sara King is the Training and Engagement Lead for AARNet. She is focused on outreach within the research sector, developing communities of interest around training, outreach and skills development in eResearch. She is currently working on creating reusable guidance information for Jupyter Notebooks and other AARNet services to be adapted for Carpentry training workshops. She is passionate about helping others develop the infrastructure and digital literacies required for working in a data-driven world, translating technology so it is accessible to everyone.["English", "Italian", "Spanish; Castilian"]https://orcid.org/0000-0003-3199-5592
Develops and provides data skills training including, data planning and management, data organisation, cleaning and wrangling, data visualisation and publication.
Location: Brisbane, QLD.
StapletonSharrons.stapleton@griffith.edu.auBrisbane, QLD.Develops and provides data skills training including, data planning and management, data organisation, cleaning and wrangling, data visualisation and publication.["English"]https://www.griffith.edu.au/libraryhttps://orcid.org/0000-0001-6017-4211
Simon works at Monash eResearch, where he teaches courses in Unix and High Performance Computing with Software Carpentry methods.
Location: Monash University
MichnowiczSimonsimon.michnowicz@monash.eduMonash UniversitySimon works at Monash eResearch, where he teaches courses in Unix and High Performance Computing with Software Carpentry methods.["English"]https://www.monash.edu/researchinfrastructure/eresearch
Dr. Sonika Tyagi is a Machine Learning lead scientist at Central Clinical School Monash University Australia. Her expertise is in developing new machine learning (ML) tools and pipelines, and applying these methods to solve biological and clinical research questions. Her current research focuses...
Location: Australia
TyagiSonikasonika.tyagi@monash.eduAustraliaDr. Sonika Tyagi is a Machine Learning lead scientist at Central Clinical School Monash University Australia. Her expertise is in developing new machine learning (ML) tools and pipelines, and applying these methods to solve biological and clinical research questions. Her current research focuses on integrative approaches to health informatics and genomics. Her group applies deep learning and natural language processing techniques to study genomes.
Sonika is a past member and contributor of ISCB Education COSI and chair/member of the GOBLET’s Standards, and EMBL-ABR and ABACBS’s education & training committees. She is currently a steering committee member of the Life Science Trainers group and affiliated with both Galaxy-Australia and Galaxy-India.["English"]https://orcid.org/0000-0003-0181-6258
Stereo imagery is widely used by research institutions and management bodies around the world as a cost-effective and non-destructive method to research and monitor fish and habitats (Whitmarsh, Fairweather and Huveneers, 2017). Stereo-video can provide accurate and precise size and range...
Location: GitHub
LangloisTimtim.langlois@uwa.edu.auGitHubStereo imagery is widely used by research institutions and management bodies around the world as a cost-effective and non-destructive method to research and monitor fish and habitats (Whitmarsh, Fairweather and Huveneers, 2017). Stereo-video can provide accurate and precise size and range measurements and can be used to study spatial and temporal patterns in fish assemblages (McLean et al., 2016), habitat composition and complexity (Collins et al., 2017), behaviour (Goetze et al., 2017), responses to anthropogenic pressures (Bosch et al., 2022) and the recovery and growth of benthic fauna (Langlois et al. 2020). It is important that users of stereo-video collect, annotate, quality control and store their data in a consistent manner, to ensure data produced is of the highest quality possible and to enable large scale collaborations. Here we collate existing best practices and propose new tools to equip ecologists to ensure that all aspects of the stereo-video workflow are performed in a consistent way.["English", "French"]https://globalarchivemanual.github.io/CheckEM/index.htmlhttps://orcid.org/0000-0001-6404-4000
Titus is a deep learning engineer and educator. He facilitates the development and delivery of various deep learning and AI training events at Monash. He also provides advice and hands-on assistance to researchers looking to apply deep learning and AI techniques to their research.
Location: Victoria, Australia
TangTitustitus.tang@monash.eduVictoria, AustraliaTitus is a deep learning engineer and educator. He facilitates the development and delivery of various deep learning and AI training events at Monash. He also provides advice and hands-on assistance to researchers looking to apply deep learning and AI techniques to their research.
eResearch Engagement Specialist, Centre for eResearch, University of Auckland.
Location: Auckland, New Zealand
SaundersTomtom.saunders@auckland.ac.nzAuckland, New ZealandeResearch Engagement Specialist, Centre for eResearch, University of Auckland.["English"]https://tomsaunders.mehttps://orcid.org/0000-0003-1780-0314
During my research career I have accumulated experience in molecular biology, neuroscience and bioinformatics. Since mid 2019 I have been the training lead for Melbourne Bioinformatics responsible for organising and delivering a diverse range of Bioinformatics training workshops to staff and...
Location: Melbourne, Victoria, Australia
PerreauVickyvperreau@unimelb.edu.auMelbourne, Victoria, AustraliaDuring my research career I have accumulated experience in molecular biology, neuroscience and bioinformatics. Since mid 2019 I have been the training lead for Melbourne Bioinformatics responsible for organising and delivering a diverse range of Bioinformatics training workshops to staff and students at The University of Melbourne and its affiliates. I also coordinate and lecture in University Masters level subjects for the Masters of Bioinformatics course.["English"]https://orcid.org/0000-0002-0773-7246
HPC and research computing professional based in Wellington, working for Manaaki Whenua and seconded to NeSI.
Location: Wellington, New Zealand
HarrellWeswes.harrell@nesi.org.nzWellington, New ZealandHPC and research computing professional based in Wellington, working for Manaaki Whenua and seconded to NeSI.["English"]https://orcid.org/0000-0002-9006-4141
