8 materials found
Target audience:
ugrad
Managing Data using Acacia @ Pawsey
Acacia is Pawsey's "warm tier" or project storage. This object store is fully integrated with Setonix, Pawsey's main supercomputer, enabling fast transfer of data for project use.
These short videos introduce this high-speed object storage for hosting research data online.
Acacia is named...
Keywords: data, data skills, Acacia, Pawsey Supercomputing Centre, object storage, File systems
Managing Data using Acacia @ Pawsey
https://www.youtube.com/playlist?list=PLmu61dgAX-aYxrbqtSYHS1ufVZ9xs1AnI
https://dresa.org.au/materials/managing-data-using-acacia-pawsey
Acacia is Pawsey's "warm tier" or project storage. This object store is fully integrated with Setonix, Pawsey's main supercomputer, enabling fast transfer of data for project use.
These short videos introduce this high-speed object storage for hosting research data online.
Acacia is named after Australia’s national floral emblem the Golden Wattle – Acacia pycnantha.
training@pawsey.org.au
Pawsey Supercomputing Research Centre
data, data skills, Acacia, Pawsey Supercomputing Centre, object storage, File systems
ugrad
masters
phd
ecr
researcher
support
professional
PCon Preparing applications for El Capitan and beyond
As Lawrence Livermore National Laboratories (LLNL) prepares to stand up its next supercomputer, El Capitan, application teams prepare to pivot to another GPU architecture.
This talk presents how the LLNL application teams made the transition from distributed-memory, CPU-only architectures to...
Keywords: GPUs, supercomputing, HPC, PaCER
PCon Preparing applications for El Capitan and beyond
https://www.youtube.com/watch?v=cj7a7gWgt8o&list=PLmu61dgAX-aZ_aa6SmmExSJtXGS7L_BF9&index=4
https://dresa.org.au/materials/pcon-preparing-applications-for-el-capitan-and-beyond
As Lawrence Livermore National Laboratories (LLNL) prepares to stand up its next supercomputer, El Capitan, application teams prepare to pivot to another GPU architecture.
This talk presents how the LLNL application teams made the transition from distributed-memory, CPU-only architectures to GPUs. They share institutional best practices. They discuss new open-source software products as tools for porting and profiling applications and as avenues for collaboration across the computational science community.
Join LLNL's Erik Draeger and Jane Herriman, who presented this talk at Pawsey's PaCER Conference in September 2023.
training@pawsey.org.au
Erik Draeger
Jane Herriman
Pawsey Supercomputing Research Centre
GPUs, supercomputing, HPC, PaCER
masters
phd
researcher
ecr
support
professional
ugrad
Introduction to Unix
A hands-on workshop covering the basics of the Unix command line interface.
Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing...
Keywords: Unix, Command line, Command-line, CLI
Resource type: tutorial
Introduction to Unix
https://www.melbournebioinformatics.org.au/tutorials/tutorials/unix/unix/
https://dresa.org.au/materials/introduction-to-unix
A hands-on workshop covering the basics of the Unix command line interface.
Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing your way around a command-line interface is highly valuable. This workshop will introduce you to Unix concepts by way of a series of hands-on exercises.
This workshop is designed for participants with little or no command-line knowledge.
Tools: Standard Unix commands, FileZilla
Topic overview:
Section 1: Getting started
Section 2: Exploring your current directory
Section 3: Making and changing directories
Section 4: Viewing and manipulating files
Section 5: Removing files and directories
Section 6: Searching files
Section 7: Putting it all together
Section 8: Transferring files
Tutorial instructions available here: https://www.melbournebioinformatics.org.au/tutorials/tutorials/unix/unix/
For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au).
Find out when we are next running this training as an in-person workshop, by visiting the Melbourne Bioinformaitcs Eventbrite page: https://www.eventbrite.com.au/o/melbourne-bioinformatics-13058846490
For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au).
Morgan, Steven (orcid: 0000-0001-6038-6126)
Unix, Command line, Command-line, CLI
ugrad
masters
mbr
phd
ecr
researcher
support
professional
Learn R or Python, generate Species Distribution Models (SDM) or SDM Climate Projections
EcoCommons has a variety of videos, R scripts, and support articles that introduce users to learning how to code in R or Python, how to generate Species Distribution Models (SDMs) or generate SDM climate projections.
We also have a growing number of use cases where users can see and work...
Keywords: Species Distribution Modelling, Beginner R coding, Beginer ecological modelling, Climate projections
Learn R or Python, generate Species Distribution Models (SDM) or SDM Climate Projections
https://www.ecocommons.org.au/learn-support/
https://dresa.org.au/materials/learn-r-or-python-generate-species-distribution-models-sdm-or-sdm-climate-projections
EcoCommons has a variety of videos, R scripts, and support articles that introduce users to learning how to code in R or Python, how to generate Species Distribution Models (SDMs) or generate SDM climate projections.
We also have a growing number of use cases where users can see and work through examples that highlight the power of bringing data together.
support@ecocommons.org.au
EcoCommons
Emilia Decker
Abhimanyu Singh
Robert Clemens
EcoCommons
Species Distribution Modelling, Beginner R coding, Beginer ecological modelling, Climate projections
ugrad
mbr
phd
ecr
professional
The Living Book of Digital Skills
The Living Book of Digital Skills (You never knew you needed until now) is a living, open source online guide to 'modern not-quite-technical computer skills' for researchers and the broader academic community.
A collaboration between Australia's Academic Research Network (AARNet) and the...
Keywords: digital skills, digital dexterity, community, open source
Resource type: guide
The Living Book of Digital Skills
https://aarnet.gitbook.io/digital-skills-gitbook-1/
https://dresa.org.au/materials/the-living-book-of-digital-skills
*The Living Book of Digital Skills (You never knew you needed until now)* is a living, open source online guide to 'modern not-quite-technical computer skills' for researchers and the broader academic community.
A collaboration between Australia's Academic Research Network (AARNet) and the Council of Australian Librarians (CAUL), this book is the creation of the CAUL Digital Dexterity Champions and their communities.
**Contributing to the Digital Skills GitBook**
The Digital Skills GitBook is an open source project and like many projects on GitHub we welcome your contributions.
If you have knowledge or expertise on one of our [requested topics](https://aarnet.gitbook.io/digital-skills-gitbook-1/requested-articles), we would love you to write an article for the book. Please let us know what you'd like to write about via our [contributor form](https://github.com/AARNet/Digital-Skills-GitBook/issues/new?assignees=sarasrking&labels=contributors&template=contributor-form.yml&title=Contributor+form%3A+).
There are other ways to contribute too. For example, you might:
* have a great idea for a new topic to be included in one of our chapters (make a new page)
* notice some information that’s out-of-date or that could be explained better (edit a page)
* come across something in the GitBook that’s not working as it should be (submit an issue)
Sara King - sara.king@aarnet.edu.au
Sara King
Miah de Francesch
Emma Chapman
Katie Mills
Ruth Cameron
digital skills, digital dexterity, community, open source
ugrad
masters
mbr
phd
ecr
researcher
support
Use the Trove Newspaper & Gazette Harvester (web app version)
This video shows how you can use the web app version of the Trove Newspaper & Gazette Harvester to download large quantities of digitised newspaper articles from Trove. Just give it a search from the Trove web interface, and the harvester will...
Keywords: Trove, newspapers, GLAM Workbench, HASS
Resource type: video
Use the Trove Newspaper & Gazette Harvester (web app version)
https://youtu.be/WKFuJR6lLF4
https://dresa.org.au/materials/use-the-trove-newspaper-gazette-harvester-web-app-version-to-download-large-quantities-of-digitised-articles
This video shows how you can use the web app version of the [Trove Newspaper & Gazette Harvester](https://glam-workbench.net/trove-harvester/) to download large quantities of digitised newspaper articles from Trove. Just give it a search from the Trove web interface, and the harvester will save the metadata of all the articles from the search results in a CSV (spreadsheet) file for further analysis. You can also save the full text of every article, as well as copies of the articles as JPG images, and even PDFs.
The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: [https://glam-workbench.net/](https://glam-workbench.net/)
Tim Sherratt (tim@timsherratt.org and @wragge on Twitter)
Trove, newspapers, GLAM Workbench, HASS
ugrad
masters
phd
ecr
researcher
support
Use QueryPic to visualise searches in Trove's digitised newspapers (part 2)
This video shows how you can construct and visualise more complex searches for digitised newspaper articles in Trove using QueryPic (see part 1 for the basics). This includes limiting the date range of your query, and changing the time...
Keywords: Trove, GLAM Workbench, visualisation, newspapers, HASS
Resource type: video
Use QueryPic to visualise searches in Trove's digitised newspapers (part 2)
https://youtu.be/J_LgNL2EM4M
https://dresa.org.au/materials/use-querypic-to-visualise-searches-in-trove-s-digitised-newspapers-part-2
This video shows how you can construct and visualise more complex searches for digitised newspaper articles in Trove using [QueryPic](https://glam-workbench.net/trove-newspapers/#querypic) (see part 1 for the basics). This includes limiting the date range of your query, and changing the time scale to zoom in and out of your search results.
The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: https://glam-workbench.net/
Tim Sherratt (tim@timsherratt.org and @wragge on Twitter)
Trove, GLAM Workbench, visualisation, newspapers, HASS
ugrad
masters
phd
ecr
researcher
Use QueryPic to visualise searches in Trove's digitised newspapers (part 1)
This video demonstrates how to use the GLAM Workbench to visualise searches for digitised newspaper articles in Trove. Using the latest version of QueryPic, we can explore the complete result set, showing how the number of matching articles...
Keywords: Trove, GLAM Workbench, visualisation, newspapers, HASS
Resource type: video
Use QueryPic to visualise searches in Trove's digitised newspapers (part 1)
https://youtu.be/vdyKNowv9gw
https://dresa.org.au/materials/use-querypic-to-visualise-searches-in-trove-s-digitised-newspapers-part-1
This video demonstrates how to use the GLAM Workbench to visualise searches for digitised newspaper articles in Trove. Using the latest version of [QueryPic](https://glam-workbench.net/trove-newspapers/#querypic), we can explore the complete result set, showing how the number of matching articles changes over time. We can even compare queries to visualise changes in language or technology. It's a great way to start exploring the possibilities of GLAM data.
The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: https://glam-workbench.net/
Tim Sherratt (tim@timsherratt.org & @wragge on Twitter)
Trove, GLAM Workbench, visualisation, newspapers, HASS
ugrad
masters
ecr
researcher