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Target audience: masters 

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Resource type: tutorial  or video 

Introduction to Unix

A hands-on workshop covering the basics of the Unix command line interface.

Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing...

Keywords: Unix, Command line, Command-line, CLI

Resource type: tutorial

Introduction to Unix https://dresa.org.au/materials/introduction-to-unix A hands-on workshop covering the basics of the Unix command line interface. Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing your way around a command-line interface is highly valuable. This workshop will introduce you to Unix concepts by way of a series of hands-on exercises. This workshop is designed for participants with little or no command-line knowledge. Tools: Standard Unix commands, FileZilla Topic overview: Section 1: Getting started Section 2: Exploring your current directory Section 3: Making and changing directories Section 4: Viewing and manipulating files Section 5: Removing files and directories Section 6: Searching files Section 7: Putting it all together Section 8: Transferring files Tutorial instructions available here: https://www.melbournebioinformatics.org.au/tutorials/tutorials/unix/unix/ For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au). Find out when we are next running this training as an in-person workshop, by visiting the Melbourne Bioinformaitcs Eventbrite page: https://www.eventbrite.com.au/o/melbourne-bioinformatics-13058846490 For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au). Unix, Command line, Command-line, CLI ugrad masters mbr phd ecr researcher support professional
VOSON Lab Code Blog

The VOSON Lab Code Blog is a space to share methods, tips, examples and code. Blog posts provide techniques to construct and analyse networks from various API and other online data sources, using the VOSON open-source software and other R based packages.

Keywords: visualisation, Data analysis, data collections, R software, Social network analysis, social media data, Computational Social Science, quantitative, Text Analytics

Resource type: tutorial, other

VOSON Lab Code Blog https://dresa.org.au/materials/voson-lab-code-blog The VOSON Lab Code Blog is a space to share methods, tips, examples and code. Blog posts provide techniques to construct and analyse networks from various API and other online data sources, using the VOSON open-source software and other R based packages. robert.ackland@anu.edu.au visualisation, Data analysis, data collections, R software, Social network analysis, social media data, Computational Social Science, quantitative, Text Analytics researcher support phd masters
10 Reproducible Research things - Building Business Continuity

The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are...

Keywords: reproducibility, data management

Resource type: tutorial, video

10 Reproducible Research things - Building Business Continuity https://dresa.org.au/materials/9-reproducible-research-things-building-business-continuity The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are replicable due to lack of information on the process. Therefore, reproducibility in research is extremely important. Researchers genuinely want to make their research more reproducible, but sometimes don’t know where to start and often don’t have the available time to investigate or establish methods on how reproducible research can speed up every day work. We aim for the philosophy “Be better than you were yesterday”. Reproducibility is a process, and we highlight there is no expectation to go from beginner to expert in a single workshop. Instead, we offer some steps you can take towards the reproducibility path following our Steps to Reproducible Research self paced program. Video: https://www.youtube.com/watch?v=bANTr9RvnGg Tutorial: https://guereslib.github.io/ten-reproducible-research-things/ a.miotto@griffith.edu.au; s.stapleton@griffith.edu.au; i.jennings@griffith.edu.au; Sharron Stapleton Isaac Jennings reproducibility, data management masters phd ecr researcher support
Use the Trove Newspaper & Gazette Harvester (web app version)

This video shows how you can use the web app version of the Trove Newspaper & Gazette Harvester to download large quantities of digitised newspaper articles from Trove. Just give it a search from the Trove web interface, and the harvester will...

Keywords: Trove, newspapers, GLAM Workbench, HASS, Trove Newspaper and Gazette Harvester

Resource type: video

Use the Trove Newspaper & Gazette Harvester (web app version) https://dresa.org.au/materials/use-the-trove-newspaper-gazette-harvester-web-app-version-to-download-large-quantities-of-digitised-articles This video shows how you can use the web app version of the [Trove Newspaper & Gazette Harvester](https://glam-workbench.net/trove-harvester/) to download large quantities of digitised newspaper articles from Trove. Just give it a search from the Trove web interface, and the harvester will save the metadata of all the articles from the search results in a CSV (spreadsheet) file for further analysis. You can also save the full text of every article, as well as copies of the articles as JPG images, and even PDFs. The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: [https://glam-workbench.net/](https://glam-workbench.net/) Tim Sherratt (tim@timsherratt.org and @wragge on Twitter) Trove, newspapers, GLAM Workbench, HASS, Trove Newspaper and Gazette Harvester ugrad masters phd ecr researcher support
Use QueryPic to visualise searches in Trove's digitised newspapers (part 2)

This video shows how you can construct and visualise more complex searches for digitised newspaper articles in Trove using QueryPic (see part 1 for the basics). This includes limiting the date range of your query, and changing the time...

Keywords: Trove, GLAM Workbench, visualisation, newspapers, HASS

Resource type: video

Use QueryPic to visualise searches in Trove's digitised newspapers (part 2) https://dresa.org.au/materials/use-querypic-to-visualise-searches-in-trove-s-digitised-newspapers-part-2 This video shows how you can construct and visualise more complex searches for digitised newspaper articles in Trove using [QueryPic](https://glam-workbench.net/trove-newspapers/#querypic) (see part 1 for the basics). This includes limiting the date range of your query, and changing the time scale to zoom in and out of your search results. The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: https://glam-workbench.net/ Tim Sherratt (tim@timsherratt.org and @wragge on Twitter) Trove, GLAM Workbench, visualisation, newspapers, HASS ugrad masters phd ecr researcher
Use QueryPic to visualise searches in Trove's digitised newspapers (part 1)

This video demonstrates how to use the GLAM Workbench to visualise searches for digitised newspaper articles in Trove. Using the latest version of QueryPic, we can explore the complete result set, showing how the number of matching articles...

Keywords: Trove, GLAM Workbench, visualisation, newspapers, HASS

Resource type: video

Use QueryPic to visualise searches in Trove's digitised newspapers (part 1) https://dresa.org.au/materials/use-querypic-to-visualise-searches-in-trove-s-digitised-newspapers-part-1 This video demonstrates how to use the GLAM Workbench to visualise searches for digitised newspaper articles in Trove. Using the latest version of [QueryPic](https://glam-workbench.net/trove-newspapers/#querypic), we can explore the complete result set, showing how the number of matching articles changes over time. We can even compare queries to visualise changes in language or technology. It's a great way to start exploring the possibilities of GLAM data. The GLAM Workbench is a collection of tools, examples, tutorials, and apps that help you make use of collection data from GLAM organisations (Galleries, Libraries, Archives, and Museums). See: https://glam-workbench.net/ Tim Sherratt (tim@timsherratt.org & @wragge on Twitter) Trove, GLAM Workbench, visualisation, newspapers, HASS ugrad masters ecr researcher