2 materials found
Keywords: Unix
Introduction to Unix
A hands-on workshop covering the basics of the Unix command line interface.
Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing...
Keywords: Unix, Command line, Command-line, CLI
Resource type: tutorial
Introduction to Unix
https://www.melbournebioinformatics.org.au/tutorials/tutorials/unix/unix/
https://dresa.org.au/materials/introduction-to-unix
A hands-on workshop covering the basics of the Unix command line interface.
Knowledge of the Unix operating system is fundamental to the use of many popular bioinformatics command-line tools. Whether you choose to run your analyses locally or on a high-performance computing system, knowing your way around a command-line interface is highly valuable. This workshop will introduce you to Unix concepts by way of a series of hands-on exercises.
This workshop is designed for participants with little or no command-line knowledge.
Tools: Standard Unix commands, FileZilla
Topic overview:
Section 1: Getting started
Section 2: Exploring your current directory
Section 3: Making and changing directories
Section 4: Viewing and manipulating files
Section 5: Removing files and directories
Section 6: Searching files
Section 7: Putting it all together
Section 8: Transferring files
Tutorial instructions available here: https://www.melbournebioinformatics.org.au/tutorials/tutorials/unix/unix/
For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au).
Find out when we are next running this training as an in-person workshop, by visiting the Melbourne Bioinformaitcs Eventbrite page: https://www.eventbrite.com.au/o/melbourne-bioinformatics-13058846490
For queries relating to this workshop, contact Melbourne Bioinformatics (bioinformatics-training@unimelb.edu.au).
Morgan, Steven (orcid: 0000-0001-6038-6126)
Unix, Command line, Command-line, CLI
ugrad
masters
mbr
phd
ecr
researcher
support
professional
Basic Linux/Unix commands
A series of eight videos (each between 5 and 10 minutes long) following the content of the Software Carpentry workshop "The Unix Shell".
Sessions 1, 2 and 3 provide instructions on the minimal level of Linux/Unix commands recommended for new...
Basic Linux/Unix commands
https://www.youtube.com/playlist?list=PLjlLx279X4yP5GodfbqQTJuJ1S9EJU3GM
https://dresa.org.au/materials/basic-linux-unix-commands
A series of eight videos (each between 5 and 10 minutes long) following the content of the Software Carpentry workshop ["The Unix Shell"](https://swcarpentry.github.io/shell-novice/).
Sessions 1, 2 and 3 provide instructions on the minimal level of Linux/Unix commands recommended for new users of HPC.
1 – An overview of how to find out where a user is in the filesystem, list the files there, and how to get help on Unix commands
2 – How to move around the file system and change into other directories
3 – Explains the difference between an absolute and relative path
4 – Overview of how to create new directories, and to create and edit new files with nano
5 – How to use the vi editor to edit files
6 – Overview of file viewers available
7 – How to copy and move files and directories
8 – How to remove files and directories
Further details and exercises with solutions can be found on the Software Carpentry "The Unix Shell" page (https://swcarpentry.github.io/shell-novice/)
QCIF Training (training@qcif.edu.au)
Marlies Hankel
HPC, high performance computer, Unix, Linux, Software Carpentry