ALA Labs
ALA Labs provides resources and articles from the Atlas of Living Australia's Science and Decision Support team. On the website, you can find:
- Posts: Code, articles, analyses and visualisations that will hopefully help you in your own work
- Research: Highlighted summaries of scientific...
Keywords: Ecology, R, Python, Rstats, Biodiversity data, Open science, Reproducibility, Coding, Data cleaning, Data visualisation, Species Distribution Modelling, Beginner R coding
ALA Labs
https://labs.ala.org.au/
https://dresa.org.au/materials/ala-labs
ALA Labs provides resources and articles from the Atlas of Living Australia's Science and Decision Support team. On the website, you can find:
- Posts: Code, articles, analyses and visualisations that will hopefully help you in your own work
- Research: Highlighted summaries of scientific research that has used data from the Atlas of Living Australia
- Software: R & Python packages that the Science & Decision Support team manage
- Books: Long-form resources with best-practice data wrangling and visualisation
- Gallery: Showcasing external work that uses tools from ALA Labs
Atlas of Living Australia support@ala.org.au
Ecology, R, Python, Rstats, Biodiversity data, Open science, Reproducibility, Coding, Data cleaning, Data visualisation, Species Distribution Modelling, Beginner R coding
WORKSHOP: R: fundamental skills for biologists
This record includes training materials associated with the Australian BioCommons workshop ‘R: fundamental skills for biologists’. This workshop took place over four, three-hour sessions on 1, 8, 15 and 22 June 2022.
Event description
Biologists need data analysis skills to be able to...
Keywords: Bioinformatics, Analysis, Statistics, R software, RStudio, Data visualisation
WORKSHOP: R: fundamental skills for biologists
https://zenodo.org/records/6766951
https://dresa.org.au/materials/workshop-r-fundamental-skills-for-biologists-81aa00db-63ad-4962-a7ac-b885bf9f676b
This record includes training materials associated with the Australian BioCommons workshop ‘R: fundamental skills for biologists’. This workshop took place over four, three-hour sessions on 1, 8, 15 and 22 June 2022.
Event description
Biologists need data analysis skills to be able to interpret, visualise and communicate their research results. While Excel can cover some data analysis needs, there is a better choice, particularly for large and complex datasets.
R is a free, open-source software and programming language that enables data exploration, statistical analysis, visualisation and more. The large variety of R packages available for analysing biological data make it a robust and flexible option for data of all shapes and sizes.
Getting started can be a little daunting for those without a background in statistics and programming. In this workshop we will equip you with the foundations for getting the most out of R and RStudio, an interactive way of structuring and keeping track of your work in R. Using biological data from a model of influenza infection, you will learn how to efficiently and reproducibly organise, read, wrangle, analyse, visualise and generate reports from your data in R.
Topics covered in this workshop include:
Spreadsheets, organising data and first steps with R
Manipulating and analysing data with dplyr
Data visualisation
Summarized experiments and getting started with Bioconductor
This workshop is presented by the Australian BioCommons and Saskia Freytag from WEHI with the assistance of a network of facilitators from the national Bioinformatics Training Cooperative.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Schedule (PDF): A breakdown of the topics and timings for the workshop
Recommended resources (PDF): A list of resources recommended by trainers and participants
Q_and_A(PDF): Archive of questions and their answers from the workshop Slack Channel.
Materials shared elsewhere:
This workshop follows the tutorial ‘Introduction to data analysis with R and Bioconductor’ which is publicly available.
https://saskiafreytag.github.io/biocommons-r-intro/
This is derived from material produced as part of The Carpentries Incubator project
https://carpentries-incubator.github.io/bioc-intro/
Melissa Burke (melissa@biocommons.org.au)
Freytag, Saskia (orcid: 0000-0002-2185-7068)
Barugahare, Adele (orcid: 0000-0002-8976-0094)
Doyle, Maria
Ansell, Brendan (orcid: 0000-0003-0297-897X)
Varshney, Akriti
Bourke, Caitlin (orcid: 0000-0002-4466-6563)
Conradsen, Cara (orcid: 0000-0001-9797-3412)
Jung, Chol-Hee (orcid: 0000-0002-2992-3162)
Sandoval, Claudia
Chandrananda, Dineika (orcid: 0000-0002-8834-9500)
Zhang, Eden (orcid: 0000-0003-0294-3734)
Rosello, Fernando (orcid: 0000-0003-3885-8777)
Iacono, Giulia (orcid: 0000-0002-1527-0754)
Tarasova, Ilariya (orcid: 0000-0002-0895-9385)
Chung, Jessica (orcid: 0000-0002-0627-0955)
Moffet, Joel
Gustafsson, Johan (orcid: 0000-0002-2977-5032)
Ding, Ke
Feher, Kristen
Perlaza-Jimenez, Laura (orcid: 0000-0002-8511-1134)
Crowe, Mark (orcid: 0000-0002-9514-2487)
Ma, Mengyao
Kandhari, Nitika (orcid: 0000-0002-0261-727X)
Williams, Sarah
Nelson, Tiffanie (orcid: 0000-0002-5341-312X)
Schreiber, Veronika (orcid: 0000-0001-6088-7828)
Pinzon Perez, William
Bioinformatics, Analysis, Statistics, R software, RStudio, Data visualisation
European Open Science Cloud (EOSC) skills & training working group
European Open Science Cloud (EOSC) skills & training working group
Keywords: international skills initiatives, skills, training, EOSC, capability building, skills uplift, skills development, digital skilled workforce, training material
European Open Science Cloud (EOSC) skills & training working group
https://zenodo.org/records/4289348
https://dresa.org.au/materials/european-open-science-cloud-eosc-skills-training-working-group-e41d62e6-55ee-4e0c-9897-bfd1068799c8
European Open Science Cloud (EOSC) skills & training working group
contact@ardc.edu.au
Kuchma, Iryna (orcid: 0000-0002-2064-3439)
international skills initiatives, skills, training, EOSC, capability building, skills uplift, skills development, digital skilled workforce, training material
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce...
Keywords: international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
https://zenodo.org/records/4289356
https://dresa.org.au/materials/oecd-report-building-digital-workforce-capacity-and-skills-for-data-intensive-science-2020-a456ae97-9241-4fc6-b7f9-57c201479317
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce capacity needed for data-intensive science, based on analysis of best practice.
The presentation highlights:
- Digital workforce capacity and COVID19: the importance of digital skills, the need for shared access to open data, software and code, and the shortfall in skills to enable a comprehensive response to such emergencies
- The ongoing need for a digital skilled workforce for data-intensive science
- Five focus areas in the report include:
1. Enablers for digital workforce capacity development
2. Defining needs: digital skills, frameworks and roles
3. Provision of training
4. Community development
5. Career paths and reward structures - Recommendations for actors incl. universities, national or regional governments
contact@ardc.edu.au
Barker, Michelle (orcid: 0000-0002-3623-172X)
international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material
Developing an organisation-wide framework to transform and uplift data capabilities
At the Bureau, data is the core of everything we do. We collect millions of observations from our networks and external sources and convert these into essential weather, climate, water and ocean services. To respond effectively to the rapidly evolving data landscape, the Data 2022 and Beyond...
Keywords: data skills, research data framework, data management, data governance, data skills uplift, data capabilities, skills development, innovative technologies, stakeholder engagement, training material
Developing an organisation-wide framework to transform and uplift data capabilities
https://zenodo.org/records/4287866
https://dresa.org.au/materials/developing-an-organisation-wide-framework-to-transform-and-uplift-data-capabilities-dfc4f34d-3b4e-4d2b-88bb-7b0ca5266798
At the Bureau, data is the core of everything we do. We collect millions of observations from our networks and external sources and convert these into essential weather, climate, water and ocean services. To respond effectively to the rapidly evolving data landscape, the Data 2022 and Beyond approach has been developed to position the organisation to maximise the impact and value of data.
The approach means transforming our data governance, practices and processes. It provides opportunities to leverage, enhance and grow data skills and competencies, while harnessing innovative technologies and methodologies for managing and using data. The Bureau will highlight the complexities of developing an organisation wide data management program in an operational environment and share some examples, learnings and reflections on the uplift journey so far. Key topics will include establishing the team, resources and tools to enhance data governance practices as well as engaging and collaborating with stakeholders.
contact@ardc.edu.au
Campbell, Belinda
data skills, research data framework, data management, data governance, data skills uplift, data capabilities, skills development, innovative technologies, stakeholder engagement, training material
Heurist Tutorials
A set of video tutorials with accompanying walkthroughs for building your first Heurist database and website. The first three tutorials show you how to get started in Heurist. The five subsequent tutorials introduce you to the five main menus in the Heurist interface.
Keywords: Heurist, Data management, Data visualisation, Digital Humanities, Databasing, website
Resource type: tutorial
Heurist Tutorials
https://heuristnetwork.org/tutorials
https://dresa.org.au/materials/heurist-tutorials
A set of video tutorials with accompanying walkthroughs for building your first Heurist database and website. The first three tutorials show you how to get started in Heurist. The five subsequent tutorials introduce you to the five main menus in the Heurist interface.
michael.falk@sydney.edu.au
Falk, Michael
Johnson, Ian
Osmakov, Artem
Heurist, Data management, Data visualisation, Digital Humanities, Databasing, website
mbr
phd
ecr
researcher
support