How can software containers help your research?
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a...
Keywords: containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
How can software containers help your research?
https://zenodo.org/records/5091260
https://dresa.org.au/materials/how-can-software-containers-help-your-research-ca0f9d41-d83b-463b-a548-402c6c642fbf
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a replicable computational environment and supports reproducibility of research results. Understanding the concept of software containers enables researchers to better communicate their research needs with their colleagues and other researchers using and developing containers.
Watch the video here: https://www.youtube.com/watch?v=HelrQnm3v4g
If you want to share this video please use this:
Australian Research Data Commons, 2021. How can software containers help your research?. [video] Available at: https://www.youtube.com/watch?v=HelrQnm3v4g DOI: http://doi.org/10.5281/zenodo.5091260 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Sam Muirhead (type: Producer)
The ARDC Communications Team (type: Editor)
The ARDC Skills and Workforce Development Team (type: ProjectMember)
The ARDC eResearch Infrastructure & Services (type: ProjectMember)
The ARDC Nectar Cloud Services team (type: ProjectMember)
containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
CheckEM User Guide
CheckEM is an open-source web based application which provides quality control assessments on metadata and image annotations of fish stereo-imagery. It is available at marine-ecology.shinyapps.io/CheckEM. The application can assess a range of sampling methods and annotation data formats for...
Keywords: stereo-video, fish, annotation
CheckEM User Guide
https://globalarchivemanual.github.io/CheckEM/articles/manuals/CheckEM_user_guide.html
https://dresa.org.au/materials/checkem-user-guide
CheckEM is an open-source web based application which provides quality control assessments on metadata and image annotations of fish stereo-imagery. It is available at marine-ecology.shinyapps.io/CheckEM. The application can assess a range of sampling methods and annotation data formats for common inaccuracies made whilst annotating stereo imagery. CheckEM creates interactive plots and tables in a graphical interface, and provides summarised data and a report of potential errors to download.
brooke.gibbons@uwa.edu.au
Brooke Gibbons
stereo-video, fish, annotation
EventMeasure Annotation Guide
EventMeasure annotation guide for baited remote underwater stereo video systems (stereo-BRUVs) for count and length
Keywords: fish, stereo-video, annotation
EventMeasure Annotation Guide
https://globalarchivemanual.github.io/CheckEM/articles/manuals/EventMeasure_annotation_guide.html
https://dresa.org.au/materials/eventmeasure-annotation-guide
EventMeasure annotation guide for baited remote underwater stereo video systems (stereo-BRUVs) for count and length
tim.langlois@uwa.edu.au
Brooke Gibbons
Tim Langlois
Claude Spencer
fish, stereo-video, annotation
Stereo-video workflows for fish and benthic ecologists
Stereo imagery is widely used by research institutions and management bodies around the world as a cost-effective and non-destructive method to research and monitor fish and habitats (Whitmarsh, Fairweather and Huveneers, 2017). Stereo-video can provide accurate and precise size and range...
Keywords: stereo-video, fish, sharks, habitats
Resource type: tutorial
Stereo-video workflows for fish and benthic ecologists
https://globalarchivemanual.github.io/CheckEM/index.html
https://dresa.org.au/materials/stereo-video-workflows-for-fish-and-benthic-ecologists
Stereo imagery is widely used by research institutions and management bodies around the world as a cost-effective and non-destructive method to research and monitor fish and habitats (Whitmarsh, Fairweather and Huveneers, 2017). Stereo-video can provide accurate and precise size and range measurements and can be used to study spatial and temporal patterns in fish assemblages (McLean et al., 2016), habitat composition and complexity (Collins et al., 2017), behaviour (Goetze et al., 2017), responses to anthropogenic pressures (Bosch et al., 2022) and the recovery and growth of benthic fauna (Langlois et al. 2020). It is important that users of stereo-video collect, annotate, quality control and store their data in a consistent manner, to ensure data produced is of the highest quality possible and to enable large scale collaborations. Here we collate existing best practices and propose new tools to equip ecologists to ensure that all aspects of the stereo-video workflow are performed in a consistent way.
tim.langlois@uwa.edu.au
Tim Langlois
Brooke Gibbons
Claude Spencer
stereo-video, fish, sharks, habitats
