1. Home
  2. Materials
Register training material
4 materials found

Contributors: Unsworth, Kathryn (type: Ed...  or Stokes, Liz (type: Other)  or Pawsey Supercomputing Resea...  or Hogg, Carolyn (type: Superv... 

WEBINAR: Getting started with command line bioinformatics

This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021. 

Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of...

Keywords: Bioinformatics, Command line, Workflows, Bash, Computational biology

WEBINAR: Getting started with command line bioinformatics https://dresa.org.au/materials/webinar-getting-started-with-command-line-bioinformatics-248027d1-0773-485a-b511-831e2fd4cc64 This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.  Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of learning to analyse large and ever growing datasets. Learning how to use the command line can open up many options for data analysis but getting started can be a little daunting for those without a background in computer science. Parice Brandies and Carolyn Hogg have recently put together ten simple rules for getting started with command-line bioinformatics to help biologists begin their computational journeys. In this webinar Parice walks you through their hints and tips for getting started with the command line. She covers topics like learning tech speak, evaluating your data and workflows, assessing computational requirements, computing options, the basics of software installation, curating and testing scripts, a bit of bash and keeping good records. The webinar will be followed by a short Q&A session. The slides were created by Parice Brandies and are based on the publication ‘Ten simple rules for getting started with command-line bioinformatics’ (https://doi.org/10.1371/journal.pcbi.1008645). The slides are shared under a Creative Commons Attribution 4.0 International unless otherwise specified and were current at the time of the webinar. Files and materials included in this record: Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. Getting started with command line bioinformatics - slides (PDF): Slides presented during the webinar Materials shared elsewhere: A recording of the webinar is available on the Australian BioCommons YouTube Channel https://youtu.be/p7pA4OLB2X4 Melissa Burke (melissa@biocommons.org.au) Hogg, Carolyn (type: Supervisor) Bioinformatics, Command line, Workflows, Bash, Computational biology
ARDC digital research capabilities and skills framework

This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.

Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role...

Keywords: training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework

ARDC digital research capabilities and skills framework https://dresa.org.au/materials/ardc-digital-research-capabilities-and-skills-framework-3b376311-87dd-470f-bb8d-e99459434c97 This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework. Capabilities and Skills Landscape Glossary - Framework terminology Data and Digital Research roles Skills/Role profiles Learning paths Skills/Data roles matrix contact@ardc.edu.au Savill, Jo (type: Editor) Duncan, Ian (type: Editor) Unsworth, Kathryn (type: Editor) Murphy, Paul (type: Editor) training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
Data Management at CLEX

In this presentation, Paula Petrelli outlines the opportunities and challenges of data management for climate science, and how she implemented DMPOnline to facilitate better workflows for publishing research data. This talk was presented to the Australasian Data Management Plans Interest Group on...

Keywords: Data management, DMP, Data management planning, DMP Online, Climate research, Data publishing, DOIs, training material

Data Management at CLEX https://dresa.org.au/materials/data-management-at-clex-4351940a-b868-4c6d-879b-2cae212ff172 In this presentation, Paula Petrelli outlines the opportunities and challenges of data management for climate science, and how she implemented DMPOnline to facilitate better workflows for publishing research data. This talk was presented to the Australasian Data Management Plans Interest Group on 19 August 2021. The group is hosted by Liz Stokes and meets every two months to discuss data management planning infrastructure. contact@ardc.edu.au Stokes, Liz (type: Other) Data management, DMP, Data management planning, DMP Online, Climate research, Data publishing, DOIs, training material
PCon Preparing applications for El Capitan and beyond

As Lawrence Livermore National Laboratories (LLNL) prepares to stand up its next supercomputer, El Capitan, application teams prepare to pivot to another GPU architecture.

This talk presents how the LLNL application teams made the transition from distributed-memory, CPU-only architectures to...

Keywords: GPUs, supercomputing, HPC, PaCER

PCon Preparing applications for El Capitan and beyond https://dresa.org.au/materials/pcon-preparing-applications-for-el-capitan-and-beyond As Lawrence Livermore National Laboratories (LLNL) prepares to stand up its next supercomputer, El Capitan, application teams prepare to pivot to another GPU architecture. This talk presents how the LLNL application teams made the transition from distributed-memory, CPU-only architectures to GPUs. They share institutional best practices. They discuss new open-source software products as tools for porting and profiling applications and as avenues for collaboration across the computational science community. Join LLNL's Erik Draeger and Jane Herriman, who presented this talk at Pawsey's PaCER Conference in September 2023. training@pawsey.org.au Pawsey Supercomputing Research Centre GPUs, supercomputing, HPC, PaCER masters phd researcher ecr support professional ugrad