WEBINAR: Getting started with command line bioinformatics
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of...
Keywords: Bioinformatics, Command line, Workflows, Bash, Computational biology
WEBINAR: Getting started with command line bioinformatics
https://zenodo.org/records/5068997
https://dresa.org.au/materials/webinar-getting-started-with-command-line-bioinformatics-248027d1-0773-485a-b511-831e2fd4cc64
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of learning to analyse large and ever growing datasets. Learning how to use the command line can open up many options for data analysis but getting started can be a little daunting for those without a background in computer science.
Parice Brandies and Carolyn Hogg have recently put together ten simple rules for getting started with command-line bioinformatics to help biologists begin their computational journeys. In this webinar Parice walks you through their hints and tips for getting started with the command line. She covers topics like learning tech speak, evaluating your data and workflows, assessing computational requirements, computing options, the basics of software installation, curating and testing scripts, a bit of bash and keeping good records. The webinar will be followed by a short Q&A session.
The slides were created by Parice Brandies and are based on the publication ‘Ten simple rules for getting started with command-line bioinformatics’ (https://doi.org/10.1371/journal.pcbi.1008645). The slides are shared under a Creative Commons Attribution 4.0 International unless otherwise specified and were current at the time of the webinar.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Getting started with command line bioinformatics - slides (PDF): Slides presented during the webinar
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel
https://youtu.be/p7pA4OLB2X4
Melissa Burke (melissa@biocommons.org.au)
Brandies, Parice (orcid: 0000-0003-1702-2938)
Hogg, Carolyn (type: Supervisor)
Bioinformatics, Command line, Workflows, Bash, Computational biology
ARDC digital research capabilities and skills framework
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role...
Keywords: training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
ARDC digital research capabilities and skills framework
https://zenodo.org/records/6558642
https://dresa.org.au/materials/ardc-digital-research-capabilities-and-skills-framework-3b376311-87dd-470f-bb8d-e99459434c97
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role profiles
Learning paths
Skills/Data roles matrix
contact@ardc.edu.au
ARDC
Savill, Jo (type: Editor)
Duncan, Ian (type: Editor)
Unsworth, Kathryn (type: Editor)
Murphy, Paul (type: Editor)
training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
How can software containers help your research?
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a...
Keywords: containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
How can software containers help your research?
https://zenodo.org/records/5091260
https://dresa.org.au/materials/how-can-software-containers-help-your-research-ca0f9d41-d83b-463b-a548-402c6c642fbf
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a replicable computational environment and supports reproducibility of research results. Understanding the concept of software containers enables researchers to better communicate their research needs with their colleagues and other researchers using and developing containers.
Watch the video here: https://www.youtube.com/watch?v=HelrQnm3v4g
If you want to share this video please use this:
Australian Research Data Commons, 2021. How can software containers help your research?. [video] Available at: https://www.youtube.com/watch?v=HelrQnm3v4g DOI: http://doi.org/10.5281/zenodo.5091260 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Sam Muirhead (type: Producer)
The ARDC Communications Team (type: Editor)
The ARDC Skills and Workforce Development Team (type: ProjectMember)
The ARDC eResearch Infrastructure & Services (type: ProjectMember)
The ARDC Nectar Cloud Services team (type: ProjectMember)
containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
