WEBINAR: Getting started with command line bioinformatics
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of...
Keywords: Bioinformatics, Command line, Workflows, Bash, Computational biology
WEBINAR: Getting started with command line bioinformatics
https://zenodo.org/records/5068997
https://dresa.org.au/materials/webinar-getting-started-with-command-line-bioinformatics-248027d1-0773-485a-b511-831e2fd4cc64
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of learning to analyse large and ever growing datasets. Learning how to use the command line can open up many options for data analysis but getting started can be a little daunting for those without a background in computer science.
Parice Brandies and Carolyn Hogg have recently put together ten simple rules for getting started with command-line bioinformatics to help biologists begin their computational journeys. In this webinar Parice walks you through their hints and tips for getting started with the command line. She covers topics like learning tech speak, evaluating your data and workflows, assessing computational requirements, computing options, the basics of software installation, curating and testing scripts, a bit of bash and keeping good records. The webinar will be followed by a short Q&A session.
The slides were created by Parice Brandies and are based on the publication ‘Ten simple rules for getting started with command-line bioinformatics’ (https://doi.org/10.1371/journal.pcbi.1008645). The slides are shared under a Creative Commons Attribution 4.0 International unless otherwise specified and were current at the time of the webinar.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Getting started with command line bioinformatics - slides (PDF): Slides presented during the webinar
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel
https://youtu.be/p7pA4OLB2X4
Melissa Burke (melissa@biocommons.org.au)
Brandies, Parice (orcid: 0000-0003-1702-2938)
Hogg, Carolyn (type: Supervisor)
Bioinformatics, Command line, Workflows, Bash, Computational biology
Research Data Governance
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
If you want to share...
Keywords: data governance, data, research, FAIR, data management, authority, share, reuse, access, provenance, policy, responsibilities, ARDC_AU, training material
Research Data Governance
https://zenodo.org/records/5044585
https://dresa.org.au/materials/research-data-governance-6ad9ab90-1a29-41db-b4aa-f1988501530d
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
If you want to share the video please use this:
Australian Research Data Commons, 2021. Research Data Governance. [video] Available at: https://youtu.be/K_xVQRdgCIc DOI: http://doi.org/10.5281/zenodo.5044585 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Wilkinson, Max (type: Editor)
Callaghan,Shannon (type: Editor)
Savill, Jo (type: Editor)
Kang, Kristan (type: Editor)
Levett, Kerry (type: Editor)
Russell, Keith (type: Editor)
Simons, Natasha (type: Editor)
data governance, data, research, FAIR, data management, authority, share, reuse, access, provenance, policy, responsibilities, ARDC_AU, training material
How can software containers help your research?
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a...
Keywords: containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
How can software containers help your research?
https://zenodo.org/records/5091260
https://dresa.org.au/materials/how-can-software-containers-help-your-research-ca0f9d41-d83b-463b-a548-402c6c642fbf
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a replicable computational environment and supports reproducibility of research results. Understanding the concept of software containers enables researchers to better communicate their research needs with their colleagues and other researchers using and developing containers.
Watch the video here: https://www.youtube.com/watch?v=HelrQnm3v4g
If you want to share this video please use this:
Australian Research Data Commons, 2021. How can software containers help your research?. [video] Available at: https://www.youtube.com/watch?v=HelrQnm3v4g DOI: http://doi.org/10.5281/zenodo.5091260 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Sam Muirhead (type: Producer)
The ARDC Communications Team (type: Editor)
The ARDC Skills and Workforce Development Team (type: ProjectMember)
The ARDC eResearch Infrastructure & Services (type: ProjectMember)
The ARDC Nectar Cloud Services team (type: ProjectMember)
containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
ARDC Research Data Rights Management Guide
A practical guide for people and organisations working with data, about rights information and licences, and to raise awareness of the implications of not having licences on data.
Who is this for? This guide is primarily directed toward members of the research sector, particularly data rights...
Keywords: data, rights, management, licence, licensing, research, policy, guide, training material
ARDC Research Data Rights Management Guide
https://zenodo.org/records/5091580
https://dresa.org.au/materials/ardc-research-data-rights-management-guide-149e27b4-fd5e-4739-8e40-be2c5ca6709c
A practical guide for people and organisations working with data, about rights information and licences, and to raise awareness of the implications of not having licences on data.
Who is this for? This guide is primarily directed toward members of the research sector, particularly data rights holders users and suppliers. Some general reference is made to characteristics and management of government data, acknowledging that this kind of data can be input to the research process. Government readers should consult their agency’s data management policies, in addition to reading this guide.
contact@ardc.edu.au
Australian Research Data Commons
Laughlin, Greg (type: Editor)
Appleyard, Baden (type: Editor)
data, rights, management, licence, licensing, research, policy, guide, training material
ARDC Research Software Rights Management Guide
How researchers may license their research software in order to share it with others.
It addresses the types of open‑source licences, and considerations you (as a researcher) should have in deciding which licence to adopt for sharing.
Keywords: Software citation, Software licensing, Software, research software, licence, License, training material
ARDC Research Software Rights Management Guide
https://zenodo.org/records/5003962
https://dresa.org.au/materials/ardc-research-software-rights-management-guide-d147c836-6ba8-4c76-a258-88e4c293569c
How researchers may license their research software in order to share it with others.
It addresses the types of open‑source licences, and considerations you (as a researcher) should have in deciding which licence to adopt for sharing.
contact@ardc.edu.au
Australian Research Data Commons
Laughlin, Greg (type: Editor)
Appleyard, Baden (type: Editor)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software licensing, Software, research software, licence, License, training material
ARDC Guide to making software citable
A short guide to making software citable using a code repository, an ORCID and a licence.
Keywords: Software citation, Software publishing, Software registries, Software repositories, Research software, training material
ARDC Guide to making software citable
https://zenodo.org/records/5003989
https://dresa.org.au/materials/ardc-guide-to-making-software-citable-46d0f9e4-ef55-43b9-b237-3e52a9d1e141
A short guide to making software citable using a code repository, an ORCID and a licence.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software publishing, Software registries, Software repositories, Research software, training material
Software publishing, licensing, and citation
A short presentation for reuse includes speaker notes.
Making software citable using a code repository, an ORCID and a licence.
Keywords: Software citation, Software publishing, Software registries, Software Repositories, research Software, training material
Software publishing, licensing, and citation
https://zenodo.org/records/5091717
https://dresa.org.au/materials/software-publishing-licensing-and-citation-d222144f-380a-455d-b4aa-c56283afc23e
A short presentation for reuse includes speaker notes.
Making software citable using a code repository, an ORCID and a licence.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software publishing, Software registries, Software Repositories, research Software, training material
WEBINAR: Getting started with command line bioinformatics
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of...
Keywords: Bioinformatics, Command line, Workflows, Bash, Computational biology
WEBINAR: Getting started with command line bioinformatics
https://zenodo.org/record/5068997
https://dresa.org.au/materials/webinar-getting-started-with-command-line-bioinformatics-a1426275-7f44-457e-94a3-298d9121fb20
This record includes training materials associated with the Australian BioCommons webinar ‘Getting started with command line bioinformatics’. This webinar took place on 22 June 2021.
Bioinformatics skills are in demand like never before and biologists are stepping up to the challenge of learning to analyse large and ever growing datasets. Learning how to use the command line can open up many options for data analysis but getting started can be a little daunting for those without a background in computer science.
Parice Brandies and Carolyn Hogg have recently put together ten simple rules for getting started with command-line bioinformatics to help biologists begin their computational journeys. In this webinar Parice walks you through their hints and tips for getting started with the command line. She covers topics like learning tech speak, evaluating your data and workflows, assessing computational requirements, computing options, the basics of software installation, curating and testing scripts, a bit of bash and keeping good records. The webinar will be followed by a short Q&A session.
The slides were created by Parice Brandies and are based on the publication ‘Ten simple rules for getting started with command-line bioinformatics’ (https://doi.org/10.1371/journal.pcbi.1008645). The slides are shared under a Creative Commons Attribution 4.0 International unless otherwise specified and were current at the time of the webinar.
**Files and materials included in this record:**
- Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
- Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
- Getting started with command line bioinformatics - slides (PDF): Slides presented during the webinar
**Materials shared elsewhere:**
A recording of the webinar is available on the Australian BioCommons YouTube Channel
https://youtu.be/p7pA4OLB2X4
Melissa Burke (melissa@biocommons.org.au)
Brandies, Parice (orcid: 0000-0003-1702-2938)
Hogg, Carolyn (type: Supervisor)
Bioinformatics, Command line, Workflows, Bash, Computational biology
Research Data Governance
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
If you want to share...
Keywords: data governance, data, research, FAIR, data management, authority, share, reuse, access, provenance, policy, responsibilities, ARDC_AU, training material
Research Data Governance
https://zenodo.org/record/5044585
https://dresa.org.au/materials/research-data-governance-cab2ebba-4e56-418d-b52f-197619e542f8
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
If you want to share the video please use this:
Australian Research Data Commons, 2021. Research Data Governance. [video] Available at: https://youtu.be/K_xVQRdgCIc DOI: http://doi.org/10.5281/zenodo.5044585 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Wilkinson, Max (type: Editor)
Callaghan,Shannon (type: Editor)
Savill, Jo (type: Editor)
Kang, Kristan (type: Editor)
Levett, Kerry (type: Editor)
Russell, Keith (type: Editor)
Simons, Natasha (type: Editor)
data governance, data, research, FAIR, data management, authority, share, reuse, access, provenance, policy, responsibilities, ARDC_AU, training material
ARDC Guide to making software citable
A short guide to making software citable using a code repository, an ORCID and a licence.
Keywords: Software citation, Software publishing, Software registries, Software repositories, Research software, training material
ARDC Guide to making software citable
https://zenodo.org/record/5003989
https://dresa.org.au/materials/ardc-guide-to-making-software-citable-d859df17-e9cf-4a7a-9a63-dfea5d561445
A short guide to making software citable using a code repository, an ORCID and a licence.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software publishing, Software registries, Software repositories, Research software, training material
Software publishing, licensing, and citation
A short presentation for reuse includes speaker notes.
Making software citable using a code repository, an ORCID and a licence.
Keywords: Software citation, Software publishing, Software registries, Software Repositories, research Software, training material
Software publishing, licensing, and citation
https://zenodo.org/record/5091717
https://dresa.org.au/materials/software-publishing-licensing-and-citation-ddd6f43a-a790-4b8a-b6b4-273b3eb3c9d1
A short presentation for reuse includes speaker notes.
Making software citable using a code repository, an ORCID and a licence.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software publishing, Software registries, Software Repositories, research Software, training material
ARDC Research Software Rights Management Guide
How researchers may license their research software in order to share it with others.
It addresses the types of open‑source licences, and considerations you (as a researcher) should have in deciding which licence to adopt for sharing.
Keywords: Software citation, Software licensing, Software, research software, licence, License, training material
ARDC Research Software Rights Management Guide
https://zenodo.org/record/5003962
https://dresa.org.au/materials/ardc-research-software-rights-management-guide
How researchers may license their research software in order to share it with others.
It addresses the types of open‑source licences, and considerations you (as a researcher) should have in deciding which licence to adopt for sharing.
contact@ardc.edu.au
Australian Research Data Commons
Laughlin, Greg (type: Editor)
Appleyard, Baden (type: Editor)
Martinez, Paula Andrea (type: ProjectLeader)
Software citation, Software licensing, Software, research software, licence, License, training material
ARDC Research Data Rights Management Guide
A practical guide for people and organisations working with data, about rights information and licences, and to raise awareness of the implications of not having licences on data.
Who is this for? This guide is primarily directed toward members of the research sector, particularly data rights...
Keywords: data, rights, management, licence, licensing, research, policy, guide, training material
ARDC Research Data Rights Management Guide
https://zenodo.org/record/5091580
https://dresa.org.au/materials/ardc-research-data-rights-management-guide-a5c12e9a-672b-4a42-b9d1-e1315d733aae
A practical guide for people and organisations working with data, about rights information and licences, and to raise awareness of the implications of not having licences on data.
Who is this for? This guide is primarily directed toward members of the research sector, particularly data rights holders users and suppliers. Some general reference is made to characteristics and management of government data, acknowledging that this kind of data can be input to the research process. Government readers should consult their agency’s data management policies, in addition to reading this guide.
contact@ardc.edu.au
Australian Research Data Commons
Laughlin, Greg (type: Editor)
Appleyard, Baden (type: Editor)
data, rights, management, licence, licensing, research, policy, guide, training material
How can software containers help your research?
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a...
Keywords: containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
How can software containers help your research?
https://zenodo.org/record/5091260
https://dresa.org.au/materials/how-can-software-containers-help-your-research-5bc99ea4-58dd-413d-a04b-230ff14873f1
This video explains software containers to a research audience. It is an introduction to why containers are beneficial for research. These benefits are standardisation, portability, reliability and reproducibility.
Software Containers in research are a solution that addresses the challenge of a replicable computational environment and supports reproducibility of research results. Understanding the concept of software containers enables researchers to better communicate their research needs with their colleagues and other researchers using and developing containers.
Watch the video here: https://www.youtube.com/watch?v=HelrQnm3v4g
If you want to share this video please use this:
Australian Research Data Commons, 2021. How can software containers help your research?. [video] Available at: https://www.youtube.com/watch?v=HelrQnm3v4g DOI: http://doi.org/10.5281/zenodo.5091260 [Accessed dd Month YYYY].
contact@ardc.edu.au
Australian Research Data Commons
Martinez, Paula Andrea (type: ProjectLeader)
Sam Muirhead (type: Producer)
The ARDC Communications Team (type: Editor)
The ARDC Skills and Workforce Development Team (type: ProjectMember)
The ARDC eResearch Infrastructure & Services (type: ProjectMember)
The ARDC Nectar Cloud Services team (type: ProjectMember)
containers, software, research, reproducibility, RSE, standard, agility, portable, reusable, code, application, reproducible, standardisation, package, system, cloud, server, version, reliability, program, collaborator, ARDC_AU, training material
Research Data Governance
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
**Cite...
Keywords: data governance, research data
Resource type: video
Research Data Governance
https://youtu.be/K_xVQRdgCIc
https://dresa.org.au/materials/research-data-governance
This video contains key information for those who make research data-related decisions. It will help project leaders to start investigating ways to develop their own data governance policy, roles and responsibilities and procedures with the input of appropriate stakeholders.
**Cite as**
Australian Research Data Commons. (2021, June 30). Research Data Governance. Zenodo. https://doi.org/10.5281/zenodo.5044585
ARDC contact: https://ardc.edu.au/contact-us
Australian Research Data Commons
Max Wilkinson
Shannon Callaghan
Jo Savill
Kristan Kang
Kerry Levett
Keith Russell
Natasha Simons
data governance, research data
ecr
researcher
support
