Fluoroquinolone antibiotics and Aortic Aneurysm or Dissection
The main objective of this project was to provide education on the use of data translated to the OMOP common data model. We aimed to showcase how the Atlas interface tool could be used to generate evidence for a highly relevant and significant research question. The clinical question that was...
Keywords: OMOP, Aortic Aneurysm, Fluoroquinolone antibiotics
Fluoroquinolone antibiotics and Aortic Aneurysm or Dissection
https://ohdsi-australia.org/full_tutorial.pdf
https://dresa.org.au/materials/fluoroquinolone-antibiotics-and-aortic-aneurysm-or-dissection
The main objective of this project was to provide education on the use of data translated to the OMOP common data model. We aimed to showcase how the Atlas interface tool could be used to generate evidence for a highly relevant and significant research question. The clinical question that was used to demonstrate the process revolved around investigating the potential association between the use of fluoroquinolones to treat urinary tract infection and the risk of experiencing aortic aneurysm and dissection within 30 days, 3 months, or 12 months of treatment initiation compared to other commonly used antibiotics. The workshop aimed to describe how data are translated to the OMOP CDM, how cohorts can be derived in these data, how to execute a robust analysis, and lastly, how to interpret the results of the study. Specifically, we described the process of translating Australian medicines dispensing data to the OMOP CDM, including the translation of the Australia Pharmaceutical Benefits Schedule data to the international RxNorm standard vocabulary.
The outcome of the project is an on-line training resource that highlights the process of study execution from start to finish. This training package will serve as an exemplar for researchers in Australia to unlock the value of their data that has been translated into the OMOP CDM. The audience for this project was database programmers, researchers, and decision-makers, and all those interested in using data to inform healthcare.
Roger Ward, Nicole Pratt
Roger Ward
Nicole Pratt
Christine Hallinan
OMOP, Aortic Aneurysm, Fluoroquinolone antibiotics
Network Know-how and Data Handling Workshop
This workshop is a ‘train-the-trainer’ session that covers topics such as jargon busting, network literacy and data movement solutions. The workshop will also provide a peek at some collaborative research tools such as Jupyter Notebooks and CloudStor. You will learn about networks, integrated...
Keywords: Networks, data handling
Resource type: lesson, presentation
Network Know-how and Data Handling Workshop
https://zenodo.org/record/6403757#.Yk-Gl8gza70
https://dresa.org.au/materials/network-know-how-and-data-handling-workshop
This workshop is a ‘train-the-trainer’ session that covers topics such as jargon busting, network literacy and data movement solutions. The workshop will also provide a peek at some collaborative research tools such as Jupyter Notebooks and CloudStor. You will learn about networks, integrated tools, data and storage and where all these things fit in the researcher’s toolkit.
This workshop is targeted at staff who would like to be more confident in giving advice to researchers about the options available to them. It is especially tailored for those with little to no technical knowledge and includes a hands-on component, using basic programming commands, but requires no previous knowledge of programming.
Sara King - sara.king@aarnet.edu.au
King, Sara (orcid: 0000-0003-3199-5592)
Mason, Ingrid (orcid: 0000-0002-0658-6095)
Burke, Melissa (orcid: 0000-0002-5571-8664)
Networks, data handling
