Open Ecoacoustics make your own recogniser
Includes the requirements and practical steps required to make your own automated call recogniser using a convolution neural network.
The "Requirements" section includes demo data and requirements for the data you should include to develop your own recogniser as well as links to Anaconda &...
Keywords: Ecoacoustics, call recogniser, convolutional neural network
Open Ecoacoustics make your own recogniser
https://openecoacoustics.org/resources/lessons/make-your-own-recognizer/
https://dresa.org.au/materials/open-ecoacoustics-make-your-own-recogniser
Includes the requirements and practical steps required to make your own automated call recogniser using a convolution neural network.
The "Requirements" section includes demo data and requirements for the data you should include to develop your own recogniser as well as links to Anaconda & Raven Lite software.
The "Practical Steps" provides instructions to run the required Jupyter notebook to build a recogniser with CNN.
* Note additional AI methods will be available soon
https://openecoacoustics.org/contact/
Dr Philip Eichinski
Dr Lance De Vine
Ecoacoustics, call recogniser, convolutional neural network
Open Ecoacoustics wrangling sound files
An introduction to slicing, dicing, chopping, resampling, compressing etc sound files with an introduction to command line and graphical tools.
A "Requirements" section with demo data, file dependencies, and required software.
A "Presentation" section with an online introduction to storing...
Keywords: Ecoacoustics, sound files, data wrangling
Open Ecoacoustics wrangling sound files
https://openecoacoustics.org/resources/lessons/wrangling-sound-files/
https://dresa.org.au/materials/open-ecoacoustics-wrangling-sound-files
An introduction to slicing, dicing, chopping, resampling, compressing etc sound files with an introduction to command line and graphical tools.
A "Requirements" section with demo data, file dependencies, and required software.
A "Presentation" section with an online introduction to storing data, repairing data and segmenting files.
A "Practical" section inclusive of setup, Terminal use, manipulating files with FFmpeg, using the AnalysisPrograms audio cutter, run EMU software
https://openecoacoustics.org/contact/
Dr Anthony Truskinger
Ecoacoustics, sound files, data wrangling
Open Ecoacoustics acoustic indices
Provides an introduction to and generation of false-colour spectrograms and indices.
Includes a "Requirements" section where demo audio files, other dependencies and required software.
Includes a "Presentation" section providing an online presentation on false colour...
Keywords: Ecoacoustics, false-colour spectrograms, acoustic indices
Open Ecoacoustics acoustic indices
https://openecoacoustics.org/resources/lessons/acoustics-indices/
https://dresa.org.au/materials/open-ecoacoustics-acoustic-indices
Provides an introduction to and generation of false-colour spectrograms and indices.
Includes a "Requirements" section where demo audio files, other dependencies and required software.
Includes a "Presentation" section providing an online presentation on false colour spectrograms.
Includes a "Practical" section that provides the setup, use of terminal, Analysis Programs software, and calculation of acoustic indices.
https://openecoacoustics.org/contact/
Marina D. A. Scarpelli
Ecoacoustics, false-colour spectrograms, acoustic indices
Open Ecoacoustics recording and labelling
This module includes recommendations for deployment, recording and labelling sounds, playing those sounds and annotation using Audacity and Raven software.
The "Requirements" section includes downloads of example data, required dependencies and software.
The "Presentation" walks through an...
Keywords: Ecoacoustics, recording sound, labelling sound, spectrograms
Open Ecoacoustics recording and labelling
https://openecoacoustics.org/resources/lessons/labelling/
https://dresa.org.au/materials/open-ecoacoustics-recording-and-labelling
This module includes recommendations for deployment, recording and labelling sounds, playing those sounds and annotation using Audacity and Raven software.
The "Requirements" section includes downloads of example data, required dependencies and software.
The "Presentation" walks through an online presentation with recommendations recorder deployment recommendations, annotation, raven software, & manual validation
The "Practical" includes setup, single species annotation of spectrograms, multi-species, and generating images
https://openecoacoustics.org/contact/
Callan Alexander
Ecoacoustics, recording sound, labelling sound, spectrograms
Open Ecoacoustics sound basics
This online presentation provides a review of five key concepts related to ecoacoustics: 1. Decibels, 2. clipping and gain, 3. ADC: Sample rate & bit depth, 4. Fast Fourier Transform (FFT), and 5. Spectrograms: time / frequency trade off.
Keywords: Ecoacoustics, sound basics, decibels, gain, sample rate, FFT, spectrograms
Open Ecoacoustics sound basics
https://openecoacoustics.org/resources/lessons/sound-basics/presentation/
https://dresa.org.au/materials/open-ecoacoustics-sound-basics
This online presentation provides a review of five key concepts related to ecoacoustics: 1. Decibels, 2. clipping and gain, 3. ADC: Sample rate & bit depth, 4. Fast Fourier Transform (FFT), and 5. Spectrograms: time / frequency trade off.
https://openecoacoustics.org/contact/
Dr Michael Towsey
Ecoacoustics, sound basics, decibels, gain, sample rate, FFT, spectrograms
Ecoacoustics & EcoCommons Generalised Dissimilarity Modelling (GDM) use case
This example highlights how data collected with passive acoustic monitoring (PAM) can be used to examine spatial variation in species composition.
This example draws from an R package developed to make GDM more accessible: https://github.com/EcoCommons-Australia/community-modelling
Keywords: Generalised Dissimilarity Modelling, Ecoacoustics, EcoCommons
Ecoacoustics & EcoCommons Generalised Dissimilarity Modelling (GDM) use case
https://openecoacoustics.org/resources/use-cases/gdm/
https://dresa.org.au/materials/ecoacoustics-ecocommons-generalised-dissimilarity-modelling-gdm-use-case
This example highlights how data collected with passive acoustic monitoring (PAM) can be used to examine spatial variation in species composition.
This example draws from an R package developed to make GDM more accessible: https://github.com/EcoCommons-Australia/community-modelling
https://openecoacoustics.org/contact/
Generalised Dissimilarity Modelling, Ecoacoustics, EcoCommons
Introduction to REDCap at Griffith University
This site is designed as a companion to Griffith Library’s Research Data Capture workshops. It can also be treated as a standalone, self-paced tutorial for learning to use REDCap (Research Electronic Data Capture) a secure web application for building and managing online surveys and databases.
Keywords: REDCap, survey instruments
Resource type: tutorial
Introduction to REDCap at Griffith University
https://griffithunilibrary.github.io/redcap-intro/
https://dresa.org.au/materials/introduction-to-redcap-at-griffith-university
This site is designed as a companion to Griffith Library’s Research Data Capture workshops. It can also be treated as a standalone, self-paced tutorial for learning to use REDCap (Research Electronic Data Capture) a secure web application for building and managing online surveys and databases.
y.banens@griffith.edu.au
Yuri Banens
REDCap, survey instruments
mbr
phd
ecr
researcher
support
Introducing Computational Thinking
This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing.
The workshop will not teach computer programming per se. Instead...
Keywords: computational skills, data skills
Resource type: tutorial
Introducing Computational Thinking
https://griffithunilibrary.github.io/intro-computational-thinking/
https://dresa.org.au/materials/introducing-computational-thinking
This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing.
The workshop will not teach computer programming per se. Instead it will cover the thought processes involved should you want to learn to program.
s.stapleton@griffith.edu.au
Belinda Weaver
computational skills, data skills
Advanced Data Wrangling with OpenRefine
This online self-paced workshop teaches advanced data wrangling skills including combining datasets, geolocating data, and “what if” exploration using OpenRefine.
Keywords: data skills, data
Resource type: tutorial
Advanced Data Wrangling with OpenRefine
https://griffithunilibrary.github.io/advanced-data-wrangle-2/
https://dresa.org.au/materials/advanced-data-wrangling-with-openrefine
This online self-paced workshop teaches advanced data wrangling skills including combining datasets, geolocating data, and “what if” exploration using OpenRefine.
s.stapleton@griffith.edu.au
Sharron Stapleton
data skills, data
mbr
phd
ecr
researcher
support
professional
Introduction to Data Cleaning with OpenRefine
Learn basic data cleaning techniques in this self-paced online workshop using open data from data.qld.gov.au and open source tool OpenRefine openrefine.org. Learn techniques to prepare messy tabular data for comupational analysis. Of most relevance to HASS disciplines, working with textual data...
Keywords: data skills, Data analysis
Resource type: tutorial
Introduction to Data Cleaning with OpenRefine
https://griffithunilibrary.github.io/data-cleaning-intro/
https://dresa.org.au/materials/introduction-to-data-cleaning-with-openrefine
Learn basic data cleaning techniques in this self-paced online workshop using open data from data.qld.gov.au and open source tool OpenRefine openrefine.org. Learn techniques to prepare messy tabular data for comupational analysis. Of most relevance to HASS disciplines, working with textual data in a structured or semi-structured format.
s.stapleton@griffith.edu.au;
Sharron Stapleton
data skills, Data analysis
mbr
phd
ecr
researcher
support
professional
10 Reproducible Research things - Building Business Continuity
The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are...
Keywords: reproducibility, data management
Resource type: tutorial, video
10 Reproducible Research things - Building Business Continuity
https://guereslib.github.io/ten-reproducible-research-things/
https://dresa.org.au/materials/9-reproducible-research-things-building-business-continuity
The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are replicable due to lack of information on the process. Therefore, reproducibility in research is extremely important.
Researchers genuinely want to make their research more reproducible, but sometimes don’t know where to start and often don’t have the available time to investigate or establish methods on how reproducible research can speed up every day work. We aim for the philosophy “Be better than you were yesterday”. Reproducibility is a process, and we highlight there is no expectation to go from beginner to expert in a single workshop. Instead, we offer some steps you can take towards the reproducibility path following our Steps to Reproducible Research self paced program.
Video:
https://www.youtube.com/watch?v=bANTr9RvnGg
Tutorial:
https://guereslib.github.io/ten-reproducible-research-things/
a.miotto@griffith.edu.au; s.stapleton@griffith.edu.au; i.jennings@griffith.edu.au;
Amanda Miotto
Julie Toohey
Sharron Stapleton
Isaac Jennings
reproducibility, data management
masters
phd
ecr
researcher
support
Data Storytelling
Nowadays, more information created than our audience could possibly analyse on their own! A study by Stanford professor Chip Heath found that during the recall of speeches, 63% of people remember stories and how they made them feel, but only 5% remember a single statistic. So, you should convert...
Keywords: data storytelling, data visualisation
Data Storytelling
https://griffithunilibrary.github.io/data-storytelling/
https://dresa.org.au/materials/data-storytelling
Nowadays, more information created than our audience could possibly analyse on their own! A study by Stanford professor Chip Heath found that during the recall of speeches, 63% of people remember stories and how they made them feel, but only 5% remember a single statistic. So, you should convert your insights and discovery from data into stories to share with non-experts with a language they understand. But how?
This tutorial helps you construct stories that incite an emotional response and create meaning and understanding for the audience by applying data storytelling techniques.
m.yamaguchi@griffith.edu.au
a.miotto@griffith.edu.au
Masami Yamaguchi
Amanda Miotto
Brett Parker
data storytelling, data visualisation
support
masters
phd
researcher