[{"id":394,"title":"WORKSHOP: RNAseq: reads to differential expression","url":"https://dresa.org.au/materials/workshop-rnaseq-reads-to-differential-expression.json","description":"This record includes training materials associated with the Australian BioCommons workshop ‘RNAseq: reads to differential expression’. This workshop took place on 10 - 11 September 2024.\nEvent description\nRNA-Seq is a popular method for measuring differential gene expression. This hands-on workshop introduces the concepts of RNA-Seq analysis, from data preparation through to statistical testing for differential gene expression. You’ll learn how to use popular tools and workflows to analyse the data, produce graphical summaries and identify differentially expressed genes.\nThe workshop will focus on the use of Galaxy, a web-based platform for accessible, reproducible, and transparent computational biological research. Widely used by researchers world wide, Galaxy gives you access to 1000’s of popular tools for analysis and processing of biological data. Galaxy Australia is a fully subsidised service provided by Australian BioCommons. \nLead trainer: Mike Thang, Galaxy Australia / QCIF\nFacilitators: Dr Selene Fernandez Valverde, UNSW\nHost: Dr Melissa Burke, Australian BioCommons.\n \nTraining materials\nMaterials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.\nFiles and materials included in this record:\n\n\nEvent metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.\n\n\nSchedule (PDF): provides a breakdown of the timing of the session.\n\n\nMaterials shared elsewhere:\nThe workshop followed the Galaxy Training Network Tutorials:\n\n\nRNAseq: reads to counts\n\n\nRNAseq counts to genes\n\n\n ","doi":"10.5281/zenodo.14759185","remote_updated_date":null,"remote_created_date":null,"scientific_topics":[],"operations":[]},{"id":395,"title":"WORKSHOP: Phylogenetics: back to basics","url":"https://dresa.org.au/materials/workshop-phylogenetics-back-to-basics.json","description":"This record includes training materials associated with the Australian BioCommons workshop ‘Phylogenetics: Back to basics’’. This workshop took place on 1 July 2024.\nEvent description\nPhylogenetics is essential for comparing biological species and understanding biodiversity for conservation. This workshop discusses the basic principles and methods of phylogenetic inference and what you can learn from phylogenetic estimation. It is intended to help you make informed decisions about which methods to use in your research.\nUsing real-life data and standard tools that are (mostly) available in Galaxy, the workshop demonstrates the principles behind a variety of methods used to estimate phylogenetic trees from aligned sequence data or distance data.\nThis is not a \"how to\" workshop, but is instead aimed at giving you a better understanding of the principles of phylogenetics and how the methods work. Maybe you've even built phylogenetic trees before but want to know more about the principles behind the tools.\nLead trainer: Professor Michael Charleston, University of Tasmania\nFacilitator: Michael Thang, QCIF and Galaxy Austrlaia\nHost: Dr Melissa Burke, Australian BioCommons.\n \nTraining materials\nMaterials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.\nFiles and materials included in this record:\n\n\nEvent metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.\n\n\nSchedule (PDF): provides a breakdown of the timing of the session.\n\n\nMaterials shared elsewhere:\nThis workshop follows the tutorial ‘Phylogenetics: back to basics’’ developed by Professor Michael Charleston and available on the Galaxy Training Network.\nhttps://training.galaxyproject.org/training-material/topics/evolution/tutorials/abc_intro_phylo/tutorial.html\n ","doi":"10.5281/zenodo.14759074","remote_updated_date":null,"remote_created_date":null,"scientific_topics":[],"operations":[]},{"id":379,"title":"WORKSHOP: Online data analysis for biologists","url":"https://dresa.org.au/materials/workshop-online-data-analysis-for-biologists.json","description":"This record includes training materials associated with the Australian BioCommons workshop ‘Online data analysis for biologists’. This workshop took place on 21 August 2024.\nTopic description\nGalaxy is a web-based platform that lets you conduct accessible, reproducible, and transparent computational biological research. Widely used by researchers world wide, Galaxy gives you access to 1000’s of popular tools for analysis and processing of biological data. It is perfect for working with a wide range of big and small datasets including genome assembly, annotation, epigenetics, metabolomics, metagenomics, proteomics, statistics, transcriptomics, variant analysis and visualisation.\nThis workshop provides an introduction to using Galaxy and available tools. Using an example dataset, you’ll practice uploading data, choosing and running tools, and viewing the results. We’ll share our top tips for managing your experiments and speeding up your analysis with workflows.\nLead trainer: Dr Gareth Price, Galaxy Australia\nFacilitator: Mike Thang, Galaxy Australia / QCIF\nInfrastructure provision: Galaxy Australia\nHost: Dr Melissa Burke, Australian BioCommons\n \nTraining Materials\nMaterials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.\nFiles and materials included in this record:\n\n\nEvent_metadata_Online_data_analysis_for_biologists_210824 (PDF): Information about the event logistics including, description, event URL, learning objectives, prerequisites, technical requirements etc.\n\n\nSchedule_Online_data_analysis_for_biologists_210824 (PDF): Schedule for the workshop providing a breakdown of topics and timings\n\n\n \nMaterials shared elsewhere:\n\nThis workshop is based on the Galaxy Training Network tutorial ‘Galaxy basics for everyone’: https://training.galaxyproject.org/training-material/topics/introduction/tutorials/galaxy-intro-101-everyone/tutorial.html\nA recording of this workshop is available on the Australian BioCommons YouTube Channel: https://www.youtube.com/watch?v=PF39KjOvreM","doi":"10.5281/zenodo.13948826","remote_updated_date":null,"remote_created_date":null,"scientific_topics":[],"operations":[]}]