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Authors: Dow, Ellen (orcid: 0000-000...  or Padmanabhan, Komathy  or Papaioannou, Anastasios (or... 


WEBINAR: KBase - A knowledge base for systems biology

This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.

Event description 

Developed for bench biologists and bioinformaticians, The Department of Energy Systems...

Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology

WEBINAR: KBase - A knowledge base for systems biology https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology-653d9753-989d-4194-9230-6e2d90652955 This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021. Event description  Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function. This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. Files and materials included in this record: Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar Materials shared elsewhere: A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/tJ94i9gOJfU The slides are also available as Google slides:  https://tinyurl.com/KBase-webinar-slides Melissa Burke (melissa@biocommons.org.au) Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Intersect: Training portfolio

This presentation explores Intersect's training evaluation model. Short term evaluation for immediate satisfaction and value of the training. Long term evaluation methods with a specific survey design to determine behavioural change and impact over time of the training on researchers' workflows,...

Keywords: training impact, evaluation, short-term evaluation, long-term evaluation, behavioural change, survey design, skills training, training material

Intersect: Training portfolio https://dresa.org.au/materials/intersect-training-portfolio-8c82060d-5eea-4091-af7b-396c9c073dab This presentation explores Intersect's training evaluation model. Short term evaluation for immediate satisfaction and value of the training. Long term evaluation methods with a specific survey design to determine behavioural change and impact over time of the training on researchers' workflows, use of support services post training and looking for links between digital tools/technologies training and research outputs and grants. You can watch the full video on YouTube here: https://youtu.be/J3tCC-t_eO4 contact@ardc.edu.au training impact, evaluation, short-term evaluation, long-term evaluation, behavioural change, survey design, skills training, training material
DReSA: Project team reflections

This presentation provides thoughts and reflections from the Digital Research Skills Australaisa (DReSA) project team on DReSA. Team members highlight their perspectives on value propositions and benefits for their respective institutiosn/organisations and nationally, as well as individual...

Keywords: training events, training material, training repository, skilled workforce, digital research skills, digital research training, digital research, trainers, FAIR training

DReSA: Project team reflections https://dresa.org.au/materials/dresa-project-team-reflections-9dcb8538-6b7c-4822-b0ee-fbe57085dc70 This presentation provides thoughts and reflections from the Digital Research Skills Australaisa (DReSA) project team on DReSA. Team members highlight their perspectives on value propositions and benefits for their respective institutiosn/organisations and nationally, as well as individual reflections on collaboration and working together on the project so far. You can watch the video on YouTube here: https://youtu.be/qqH92itI8SI   contact@ardc.edu.au training events, training material, training repository, skilled workforce, digital research skills, digital research training, digital research, trainers, FAIR training
Skills training & materials - developing sharing guidelines and agreements

Anyone who has developed training content - specifically hands-on, short format, data science training - will know that it is expensive and time consuming. As a rule of thumb, one can expect to spend 15-20 hours of development time per hour of delivery time.

Even once the main work is done,...

Keywords: training material, training, sharing guidelines, sharing agreements

Skills training & materials - developing sharing guidelines and agreements https://dresa.org.au/materials/skills-training-materials-developing-sharing-guidelines-and-agreements-3bd2409c-44d0-45d9-b598-e3301242fb2d Anyone who has developed training content - specifically hands-on, short format, data science training - will know that it is expensive and time consuming. As a rule of thumb, one can expect to spend 15-20 hours of development time per hour of delivery time. Even once the main work is done, there are still ongoing maintenance demands, from correcting the inevitable typos and adapting to software version updates, to major rewrites as best practice techniques evolve. Few Australians training organisations have a funding mandate for developing training material for general use. Instead most of us build training for our own communities in response to demand from those communities, allocating our limited resources to the areas of perceived highest demand. Notwithstanding this local focus, most training organisations operate in similar research environments with similar community demands, so there are real opportunities for benefit from collaboration between those organisations. In this session we will discuss how such collaboration could occur and whether a standardised national agreement around sharing of training material is an achievable outcome. This session will not discuss co-delivery opportunities, institution-specific content such as HPC training and data management, or consolidation of existing similar workshops into a single course. These are important topics, but we don’t have time to do them justice today. contact@ardc.edu.au training material, training, sharing guidelines, sharing agreements
Time to fill the gaps: Building out a national training inventory

 

This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting.

The newly formed group of...

Keywords: training inventory, training registry, national skills initiatives, training material

Time to fill the gaps: Building out a national training inventory https://dresa.org.au/materials/time-to-fill-the-gaps-building-out-a-national-training-inventory-cd4f10d8-83c0-4870-95e2-ee9ed4aa72c7   This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting. The newly formed group of eResearch support staff gathered by the Melbourne Data Analytics Platform (MDAP) and Sydney Informatics Hub (SIH) is one such group, as is the Lightweight Working Group (LWG): Researcher digital skills training data for enabling digital infrastructure use, spearheaded by University of Melbourne’s David Flanders during the pre-Skills Summit discussions. In this session we seek to build on the momentum, by including a hands-on working session. Participants are asked to come with information to share and questions they seek to answer. During the first half of this session, attendees will populate a public document with shareable training details. The goal is to at least double the size of the new cross-institutional national training collection started by the LWG. The second half of this session will be to ask questions to arrive at next steps. What do we need to do to continue building out this national training inventory and who will be in charge of maintaining and distributing the archive? What platforms exist and are used to capture training data and material and make it readily maintainable and findable? Can the material be reused and how do we recognise and capture re-use? Do we know about how to apply a license to our materials for appropriate reuse or do we need guidance? While there will likely be more questions than these, one question has been answered. When can we move from talking to doing? That time is now. contact@ardc.edu.au training inventory, training registry, national skills initiatives, training material
National skills ecosystem - call to action

In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.

  • Skilled trainers / facilitators

  • National training registry

  • National training event calendar

  • Jointly developed training

  • Research...

Keywords: national skills initiatives, data skills, training, skills community, training material

National skills ecosystem - call to action https://dresa.org.au/materials/national-skills-ecosystem-call-to-action-ffd9b4ed-b557-496b-ac35-72467c03c71b In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4. - Skilled trainers / facilitators - National training registry - National training event calendar - Jointly developed training - Research support professionals: career/progression contact@ardc.edu.au national skills initiatives, data skills, training, skills community, training material
WEBINAR: KBase - A knowledge base for systems biology

This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.

Event description

Developed for bench biologists and bioinformaticians, The Department of Energy...

Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology

WEBINAR: KBase - A knowledge base for systems biology https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021. **Event description** Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function. This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. **Files and materials included in this record:** - Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. - Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. - Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources - Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar **Materials shared elsewhere:** A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/tJ94i9gOJfU The slides are also available as Google slides:  https://tinyurl.com/KBase-webinar-slides Melissa Burke (melissa@biocommons.org.au) Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Skills training & materials - developing sharing guidelines and agreements

Anyone who has developed training content - specifically hands-on, short format, data science training - will know that it is expensive and time consuming. As a rule of thumb, one can expect to spend 15-20 hours of development time per hour of delivery time.

Even once the main work is done,...

Keywords: training material, training, sharing guidelines, sharing agreements

Skills training & materials - developing sharing guidelines and agreements https://dresa.org.au/materials/skills-training-materials-developing-sharing-guidelines-and-agreements Anyone who has developed training content - specifically hands-on, short format, data science training - will know that it is expensive and time consuming. As a rule of thumb, one can expect to spend 15-20 hours of development time per hour of delivery time. Even once the main work is done, there are still ongoing maintenance demands, from correcting the inevitable typos and adapting to software version updates, to major rewrites as best practice techniques evolve. Few Australians training organisations have a funding mandate for developing training material for general use. Instead most of us build training for our own communities in response to demand from those communities, allocating our limited resources to the areas of perceived highest demand. Notwithstanding this local focus, most training organisations operate in similar research environments with similar community demands, so there are real opportunities for benefit from collaboration between those organisations. In this session we will discuss how such collaboration could occur and whether a standardised national agreement around sharing of training material is an achievable outcome. This session will not discuss co-delivery opportunities, institution-specific content such as HPC training and data management, or consolidation of existing similar workshops into a single course. These are important topics, but we don’t have time to do them justice today. contact@ardc.edu.au training material, training, sharing guidelines, sharing agreements
Intersect: Training portfolio

This presentation explores Intersect's training evaluation model. Short term evaluation for immediate satisfaction and value of the training. Long term evaluation methods with a specific survey design to determine behavioural change and impact over time of the training on researchers' workflows,...

Keywords: training impact, evaluation, short-term evaluation, long-term evaluation, behavioural change, survey design, skills training, training material

Intersect: Training portfolio https://dresa.org.au/materials/intersect-training-portfolio This presentation explores Intersect's training evaluation model. Short term evaluation for immediate satisfaction and value of the training. Long term evaluation methods with a specific survey design to determine behavioural change and impact over time of the training on researchers' workflows, use of support services post training and looking for links between digital tools/technologies training and research outputs and grants. You can watch the full video on YouTube here: https://youtu.be/J3tCC-t_eO4 contact@ardc.edu.au training impact, evaluation, short-term evaluation, long-term evaluation, behavioural change, survey design, skills training, training material
National skills ecosystem - call to action

In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.

  • Skilled trainers / facilitators

  • National training registry

  • National training event calendar

  • Jointly developed training

  • Research...

Keywords: national skills initiatives, data skills, training, skills community, training material

National skills ecosystem - call to action https://dresa.org.au/materials/national-skills-ecosystem-call-to-action In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4. - Skilled trainers / facilitators - National training registry - National training event calendar - Jointly developed training - Research support professionals: career/progression contact@ardc.edu.au national skills initiatives, data skills, training, skills community, training material
DReSA: Project team reflections

This presentation provides thoughts and reflections from the Digital Research Skills Australaisa (DReSA) project team on DReSA. Team members highlight their perspectives on value propositions and benefits for their respective institutiosn/organisations and nationally, as well as individual...

Keywords: training events, training material, training repository, skilled workforce, digital research skills, digital research training, digital research, trainers, FAIR training

DReSA: Project team reflections https://dresa.org.au/materials/dresa-project-team-reflections This presentation provides thoughts and reflections from the Digital Research Skills Australaisa (DReSA) project team on DReSA. Team members highlight their perspectives on value propositions and benefits for their respective institutiosn/organisations and nationally, as well as individual reflections on collaboration and working together on the project so far. You can watch the video on YouTube here: https://youtu.be/qqH92itI8SI   contact@ardc.edu.au training events, training material, training repository, skilled workforce, digital research skills, digital research training, digital research, trainers, FAIR training
Time to fill the gaps: Building out a national training inventory

 

This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting.

The newly formed group of...

Keywords: training inventory, training registry, national skills initiatives, training material

Time to fill the gaps: Building out a national training inventory https://dresa.org.au/materials/time-to-fill-the-gaps-building-out-a-national-training-inventory   This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting. The newly formed group of eResearch support staff gathered by the Melbourne Data Analytics Platform (MDAP) and Sydney Informatics Hub (SIH) is one such group, as is the Lightweight Working Group (LWG): Researcher digital skills training data for enabling digital infrastructure use, spearheaded by University of Melbourne’s David Flanders during the pre-Skills Summit discussions. In this session we seek to build on the momentum, by including a hands-on working session. Participants are asked to come with information to share and questions they seek to answer. During the first half of this session, attendees will populate a public document with shareable training details. The goal is to at least double the size of the new cross-institutional national training collection started by the LWG. The second half of this session will be to ask questions to arrive at next steps. What do we need to do to continue building out this national training inventory and who will be in charge of maintaining and distributing the archive? What platforms exist and are used to capture training data and material and make it readily maintainable and findable? Can the material be reused and how do we recognise and capture re-use? Do we know about how to apply a license to our materials for appropriate reuse or do we need guidance? While there will likely be more questions than these, one question has been answered. When can we move from talking to doing? That time is now. contact@ardc.edu.au training inventory, training registry, national skills initiatives, training material