WEBINAR: KBase - A knowledge base for systems biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy Systems...
Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
WEBINAR: KBase - A knowledge base for systems biology
https://zenodo.org/records/5717580
https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology-653d9753-989d-4194-9230-6e2d90652955
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function.
This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources
Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/tJ94i9gOJfU
The slides are also available as Google slides:
https://tinyurl.com/KBase-webinar-slides
Melissa Burke (melissa@biocommons.org.au)
Dow, Ellen (orcid: 0000-0002-2079-0260)
Wood-Charlson, Elisha (orcid: 0000-0001-9557-7715)
Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Locking the front door without leaving the windows open: positioning authentication technologies within the "Five Safes" framework for effective use of sensitive research data
This project explores the options for access to sensitive data sets; what authentication technologies (e.g. multi-factor authentication) are needed to access sensitive data and secure compute environments. This project seeks to position choices around authentication technologies within the Five...
Keywords: ARDC, Storage and Compute Summit, FAIR, Infrastructure, NCRIS, eResearch, training material
Locking the front door without leaving the windows open: positioning authentication technologies within the "Five Safes" framework for effective use of sensitive research data
https://zenodo.org/records/3547980
https://dresa.org.au/materials/locking-the-front-door-without-leaving-the-windows-open-positioning-authentication-technologies-within-the-five-safes-framework-for-effective-use-of-sensitive-research-data-b83124f8-2add-41c6-b194-d5dd50d098f6
This project explores the options for access to sensitive data sets; what authentication technologies (e.g. multi-factor authentication) are needed to access sensitive data and secure compute environments. This project seeks to position choices around authentication technologies within the Five Safes framework for research use of sensitive data, proposed in 2003 by Felix Ritchie of the UK Office of National Statistics:
• Safe Projects: is the proposed research use of the data appropriate?
• Safe People: can the users be trusted to use the data in an appropriate manner?
• Safe Settings: does the access facility limit unauthorised use?
• Safe Data: is there a disclosure risk in the data itself?
• Safe Outputs: are the research results non-disclosive i.e. they do not compromise privacy or breach confidentiality?
contact@ardc.edu.au
Churches, Tim
Jorm, Louisa
ARDC, Storage and Compute Summit, FAIR, Infrastructure, NCRIS, eResearch, training material
Advancing Health Research Through Data Sharing: Event Toolkit
As part of the ARDC Community Connect project, An event was run on October 25th 2023 that was designed to raise awareness of Health Research Data Sharing and of the Health Data Australia platform. This 'event toolkit' resource has been developed in order to make the planning materials and event...
Keywords: training material, event, data sharing
Advancing Health Research Through Data Sharing: Event Toolkit
https://zenodo.org/records/10211837
https://dresa.org.au/materials/advancing-health-research-through-data-sharing-event-toolkit
As part of the ARDC Community Connect project, An event was run on October 25th 2023 that was designed to raise awareness of Health Research Data Sharing and of the Health Data Australia platform. This 'event toolkit' resource has been developed in order to make the planning materials and event outputs available to those who may wish to reproduce the event or utilise the event outputs for their own awareness building activities. The event recordings for the event held on October 25th are available on YouTube here.
Amany.Gouda-Vossos@ardc.edu.au
Australasian Leukaemia and Lymphoma Group
University of Melbourne
Deakin University
South Australian Health and Medical Research Institute
training material, event, data sharing
Health Studies Australian National Data Asset (HeSANDA) flyer
Health Studies Australian National Data Asset (HeSANDA) - Digital FlyerReusing data to accelerate research and better health outcomes
Keywords: clinical trial, dataset, training material
Health Studies Australian National Data Asset (HeSANDA) flyer
https://zenodo.org/records/10199242
https://dresa.org.au/materials/health-studies-australian-national-data-asset-hesanda-flyer
Health Studies Australian National Data Asset (HeSANDA) - Digital FlyerReusing data to accelerate research and better health outcomes
Amany.Gouda-Vossos@ardc.edu.au
Australian Research Data Commons
South Australian Health and Medical Research Institute
University of Melbourne
Deakin University
Australasian Leukaemia and Lymphoma Group
Menzies School of Health Research
Australian e-Health Research Centre
Queensland Cyber Infrastructure Foundation
University of Sydney
Curtin University
clinical trial, dataset, training material
Principles Aligned Institutionally-Contextualised (PAI-C) RDM Training
This GitHub repository contains resources for an institution to contextualise a principles-based RDM training with its institution's research data management policies, processes and systems.
The adoption of PAI-C across institutions will contribute to a common baseline understanding of RDM...
Keywords: PAI-C, Training, Data Management
Principles Aligned Institutionally-Contextualised (PAI-C) RDM Training
https://github.com/Adrian-W-Chew/PAI-C-RDM-Training
https://dresa.org.au/materials/principles-aligned-institutionally-contextualised-pai-c-rdm-training
This GitHub repository contains resources for an institution to contextualise a principles-based RDM training with its institution's research data management policies, processes and systems.
The adoption of PAI-C across institutions will contribute to a common baseline understanding of RDM across institutions, which in turn will facilitate cross institutional management of data (e.g. when researchers move between institutions, and collaborate across institutions).
Dr Adrian W. Chew (w.l.chew@unsw.edu.au)
Dr Adrian W. Chew
Dr Adele Haythornthwaite
Brock Askey
Dr Jacky Cho
Dr Anesh Nair
Dr Kyle Hemming
Iftikhar Hayat
Joanna Dziedzic
Janice Chan
Kaitlyn Houston
Linlin Zhao
Caitlin Savage
Jessica Suna
Dr Emilia Decker
Sharron Stapleton
PAI-C, Training, Data Management
WEBINAR: KBase - A knowledge base for systems biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy...
Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
WEBINAR: KBase - A knowledge base for systems biology
https://zenodo.org/record/5717580
https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
**Event description**
Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function.
This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
**Files and materials included in this record:**
- Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
- Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
- Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources
- Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar
**Materials shared elsewhere:**
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/tJ94i9gOJfU
The slides are also available as Google slides:
https://tinyurl.com/KBase-webinar-slides
Melissa Burke (melissa@biocommons.org.au)
Dow, Ellen (orcid: 0000-0002-2079-0260)
Wood-Charlson, Elisha (orcid: 0000-0001-9557-7715)
Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Locking the front door without leaving the windows open: positioning authentication technologies within the "Five Safes" framework for effective use of sensitive research data
This project explores the options for access to sensitive data sets; what authentication technologies (e.g. multi-factor authentication) are needed to access sensitive data and secure compute environments. This project seeks to position choices around authentication technologies within the Five...
Keywords: ARDC, Storage and Compute Summit, FAIR, Infrastructure, NCRIS, eResearch, training material
Locking the front door without leaving the windows open: positioning authentication technologies within the "Five Safes" framework for effective use of sensitive research data
https://zenodo.org/record/3547980
https://dresa.org.au/materials/locking-the-front-door-without-leaving-the-windows-open-positioning-authentication-technologies-within-the-five-safes-framework-for-effective-use-of-sensitive-research-data
This project explores the options for access to sensitive data sets; what authentication technologies (e.g. multi-factor authentication) are needed to access sensitive data and secure compute environments. This project seeks to position choices around authentication technologies within the Five Safes framework for research use of sensitive data, proposed in 2003 by Felix Ritchie of the UK Office of National Statistics:
• Safe Projects: is the proposed research use of the data appropriate?
• Safe People: can the users be trusted to use the data in an appropriate manner?
• Safe Settings: does the access facility limit unauthorised use?
• Safe Data: is there a disclosure risk in the data itself?
• Safe Outputs: are the research results non-disclosive i.e. they do not compromise privacy or breach confidentiality?
contact@ardc.edu.au
Churches, Tim
Jorm, Louisa
ARDC, Storage and Compute Summit, FAIR, Infrastructure, NCRIS, eResearch, training material
