WEBINAR: KBase - A knowledge base for systems biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy Systems...
Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
WEBINAR: KBase - A knowledge base for systems biology
https://zenodo.org/records/5717580
https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology-653d9753-989d-4194-9230-6e2d90652955
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function.
This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources
Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/tJ94i9gOJfU
The slides are also available as Google slides:
https://tinyurl.com/KBase-webinar-slides
Melissa Burke (melissa@biocommons.org.au)
Dow, Ellen (orcid: 0000-0002-2079-0260)
Wood-Charlson, Elisha (orcid: 0000-0001-9557-7715)
Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
ARDC 2023 Skills Summit Lightning Talks (Day 1 - February 9, 2023)
Presentations to the ARDC Skills Summit 2023 (Lightning Talks Day 1 - February 9th, 2023)
Dr Pablo Franco - Assessing the effectiveness of training: Teaching digital skills to researchers
Aidan Wilson - Scaling training operations & succession planning
Dr Paula Martinez - Building...
Keywords: training material, research, training, Kirkpatrick framework, RezBaz, impact, skills, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building, visible research software interest group, carpentries, social infrastructure
ARDC 2023 Skills Summit Lightning Talks (Day 1 - February 9, 2023)
https://zenodo.org/records/7710856
https://dresa.org.au/materials/ardc-2023-skills-summit-lightning-talks-day-1-february-9-2023-c91367d6-2366-4a4e-aa05-631d1e5fd95f
Presentations to the ARDC Skills Summit 2023 (Lightning Talks Day 1 - February 9th, 2023)
Dr Pablo Franco - Assessing the effectiveness of training: Teaching digital skills to researchers
Aidan Wilson - Scaling training operations & succession planning
Dr Paula Martinez - Building community
Dr Mark Crowe - Bringing training to research communities - ResBaz
Liz Stokes - The Carpentries Partnership
These presentations cover theoretical frameworks for assessing training, The Kirkpatrick Model of Training Evaluation, outreach, RezBaz, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building ideas, visible research software interest group, The Carpentries and social infrastructure.
contact@ardc.edu.au
Franco, Pablo (orcid: 0000-0003-2608-2035)
Wilson, Aidan (orcid: 0000-0001-9858-5470)
Martinez, Paula (orcid: 0000-0002-8990-1985)
Crowe, Mark (orcid: 0000-0002-9514-2487)
Stokes, Liz (orcid: 0000-0002-2973-5647)
training material, research, training, Kirkpatrick framework, RezBaz, impact, skills, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building, visible research software interest group, carpentries, social infrastructure
23 (research data) Things
23 (research data) things is a set of training materials exploring research data management. Each of the 23 things offers a variety of learning opportunities with activities at three levels of complexity:
- Getting started
- Learn more
- Challenge me
All resources used in the program are online...
Keywords: research data management, training material
23 (research data) Things
https://zenodo.org/records/3955524
https://dresa.org.au/materials/23-research-data-things-793872d2-c221-4cd6-91be-11a313c74b78
23 (research data) things is a set of training materials exploring research data management. Each of the 23 things offers a variety of learning opportunities with activities at three levels of complexity:
* Getting started
* Learn more
* Challenge me
All resources used in the program are online and free to use and reuse under a Creative Commons Attribution 4.0 International licence. You could use all of them as a self-paced course, or choose components to integrate into your own course.
The 23 things are designed to build knowledge as the program progresses, so if you’re new to the world of research data management, we suggest you start with things 1-3 and then decide where you want to go from there.
These materials supported an international community-based training program delivered in 2016 by the Australian National Data Service.
This release migrates these materials to a GitHub repository for continued maintenance. Some updates were made to material that was outdated.
We welcome contributions and suggestions via GitHub Issue or Pull Request.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Stokes, Liz (orcid: 0000-0002-2973-5647)
Burton, Nichola (orcid: 0000-0003-4470-4846)
Kelly, Andrew (orcid: 0000-0002-5377-5526)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Brownlee, Rowan (orcid: 0000-0002-1955-1262)
Levett, Kerry (orcid: 0000-0001-5963-0195)
Brady, Catherine (orcid: 0000-0002-7919-7592)
research data management, training material
National skills ecosystem - call to action
In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.
Skilled trainers / facilitators
National training registry
National training event calendar
Jointly developed training
Research...
Keywords: national skills initiatives, data skills, training, skills community, training material
National skills ecosystem - call to action
https://zenodo.org/records/4289335
https://dresa.org.au/materials/national-skills-ecosystem-call-to-action-ffd9b4ed-b557-496b-ac35-72467c03c71b
In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.
- Skilled trainers / facilitators
- National training registry
- National training event calendar
- Jointly developed training
- Research support professionals: career/progression
contact@ardc.edu.au
Padmanabhan, Komathy
Backhaus, Ann
Papaioannou, Anastasios (orcid: 0000-0002-8959-4559)
Tang, Titus
Crowe, Mark (orcid: 0000-0002-9514-2487)
Vanichkina, Darya (orcid: 0000-0002-0406-164X)
Unsworth, Kathryn (orcid: 0000-0002-5407-9987)
Stokes, Liz (orcid: 0000-0002-2973-5647)
Liffers, Matthias (orcid: 0000-0002-3639-2080)
national skills initiatives, data skills, training, skills community, training material
ARDC FAIR Data 101 self-guided
FAIR Data 101 v3.0 is a self-guided course covering the FAIR Data principles
The FAIR Data 101 virtual course was designed and delivered by the ARDC Skilled Workforce Program twice in 2020 and has now been reworked as a self-guided course.
The course structure was based on 'FAIR Data in the...
Keywords: training material, FAIR data, video, webinar, activities, quiz, FAIR, research data management
ARDC FAIR Data 101 self-guided
https://zenodo.org/records/5094034
https://dresa.org.au/materials/ardc-fair-data-101-self-guided-2d794a84-f0ff-4e11-a39c-fa8ea481e097
FAIR Data 101 v3.0 is a self-guided course covering the FAIR Data principles
The FAIR Data 101 virtual course was designed and delivered by the ARDC Skilled Workforce Program twice in 2020 and has now been reworked as a self-guided course.
The course structure was based on 'FAIR Data in the Scholarly Communications Lifecycle', run by Natasha Simons at the FORCE11 Scholarly Communications Institute. These training materials are hosted on GitHub.
contact@ardc.edu.au
Stokes, Liz (orcid: 0000-0002-2973-5647)
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Burton, Nichola (orcid: 0000-0003-4470-4846)
Martinez, Paula A. (orcid: 0000-0002-8990-1985)
Simons, Natasha (orcid: 0000-0003-0635-1998)
Russell, Keith (orcid: 0000-0001-5390-2719)
McCafferty, Siobhann (orcid: 0000-0002-2491-0995)
Ferrers, Richard (orcid: 0000-0002-2923-9889)
McEachern, Steve (orcid: 0000-0001-7848-4912)
Barlow, Melanie (orcid: 0000-0002-3956-5784)
Brady, Catherine (orcid: 0000-0002-7919-7592)
Brownlee, Rowan (orcid: 0000-0002-1955-1262)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Quiroga, Maria del Mar (orcid: 0000-0002-8943-2808)
training material, FAIR data, video, webinar, activities, quiz, FAIR, research data management
ARDC 2023 Skills Summit Lightning Talks (Day 1 - February 9, 2023)
Presentations to the ARDC Skills Summit 2023 (Lightning Talks Day 1 - February 9th, 2023)
Dr Pablo Franco - Assessing the effectiveness of training: Teaching digital skills to researchers
Aidan Wilson - Scaling training operations & succession planning
Dr Paula Martinez - Building...
Keywords: training material, research, training, Kirkpatrick framework, RezBaz, impact, skills, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building, visible research software interest group, carpentries, social infrastructure
ARDC 2023 Skills Summit Lightning Talks (Day 1 - February 9, 2023)
https://zenodo.org/record/7710856
https://dresa.org.au/materials/ardc-2023-skills-summit-lightning-talks-day-1-february-9-2023
Presentations to the ARDC Skills Summit 2023 (Lightning Talks Day 1 - February 9th, 2023)
Dr Pablo Franco - Assessing the effectiveness of training: Teaching digital skills to researchers
Aidan Wilson - Scaling training operations & succession planning
Dr Paula Martinez - Building community
Dr Mark Crowe - Bringing training to research communities - ResBaz
Liz Stokes - The Carpentries Partnership
These presentations cover theoretical frameworks for assessing training, The Kirkpatrick Model of Training Evaluation, outreach, RezBaz, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building ideas, visible research software interest group, The Carpentries and social infrastructure.
contact@ardc.edu.au
Franco, Pablo (orcid: 0000-0003-2608-2035)
Wilson, Aidan (orcid: 0000-0001-9858-5470)
Martinez, Paula (orcid: 0000-0002-8990-1985)
Crowe, Mark (orcid: 0000-0002-9514-2487)
Stokes, Liz (orcid: 0000-0002-2973-5647)
training material, research, training, Kirkpatrick framework, RezBaz, impact, skills, impact assessment, training at scale, succession planning, automated training organisation systems, trainer workforce, research software community, participation models, community building, visible research software interest group, carpentries, social infrastructure
Introducing Computational Thinking
This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing.
The workshop will not teach computer programming per se. Instead...
Keywords: computational skills, data skills
Resource type: tutorial
Introducing Computational Thinking
https://griffithunilibrary.github.io/intro-computational-thinking/
https://dresa.org.au/materials/introducing-computational-thinking
This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing.
The workshop will not teach computer programming per se. Instead it will cover the thought processes involved should you want to learn to program.
s.stapleton@griffith.edu.au
Belinda Weaver
computational skills, data skills
WEBINAR: KBase - A knowledge base for systems biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
Event description
Developed for bench biologists and bioinformaticians, The Department of Energy...
Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
WEBINAR: KBase - A knowledge base for systems biology
https://zenodo.org/record/5717580
https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology
This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.
**Event description**
Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function.
This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
**Files and materials included in this record:**
- Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
- Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
- Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources
- Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar
**Materials shared elsewhere:**
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/tJ94i9gOJfU
The slides are also available as Google slides:
https://tinyurl.com/KBase-webinar-slides
Melissa Burke (melissa@biocommons.org.au)
Dow, Ellen (orcid: 0000-0002-2079-0260)
Wood-Charlson, Elisha (orcid: 0000-0001-9557-7715)
Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
National skills ecosystem - call to action
In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.
Skilled trainers / facilitators
National training registry
National training event calendar
Jointly developed training
Research...
Keywords: national skills initiatives, data skills, training, skills community, training material
National skills ecosystem - call to action
https://zenodo.org/record/4289335
https://dresa.org.au/materials/national-skills-ecosystem-call-to-action
In this Community Action session working groups will be formed based on the challenges/opportunities that were prioritised in Community Action session #4.
- Skilled trainers / facilitators
- National training registry
- National training event calendar
- Jointly developed training
- Research support professionals: career/progression
contact@ardc.edu.au
Padmanabhan, Komathy
Backhaus, Ann
Papaioannou, Anastasios (orcid: 0000-0002-8959-4559)
Tang, Titus
Crowe, Mark (orcid: 0000-0002-9514-2487)
Vanichkina, Darya (orcid: 0000-0002-0406-164X)
Unsworth, Kathryn (orcid: 0000-0002-5407-9987)
Stokes, Liz (orcid: 0000-0002-2973-5647)
Liffers, Matthias (orcid: 0000-0002-3639-2080)
national skills initiatives, data skills, training, skills community, training material
23 (research data) Things
23 (research data) things is a set of training materials exploring research data management. Each of the 23 things offers a variety of learning opportunities with activities at three levels of complexity:
- Getting started
- Learn more
- Challenge me
All resources used in the program are online...
Keywords: research data management, training material
23 (research data) Things
https://zenodo.org/record/3955524
https://dresa.org.au/materials/23-research-data-things
23 (research data) things is a set of training materials exploring research data management. Each of the 23 things offers a variety of learning opportunities with activities at three levels of complexity:
* Getting started
* Learn more
* Challenge me
All resources used in the program are online and free to use and reuse under a Creative Commons Attribution 4.0 International licence. You could use all of them as a self-paced course, or choose components to integrate into your own course.
The 23 things are designed to build knowledge as the program progresses, so if you’re new to the world of research data management, we suggest you start with things 1-3 and then decide where you want to go from there.
These materials supported an international community-based training program delivered in 2016 by the Australian National Data Service.
This release migrates these materials to a GitHub repository for continued maintenance. Some updates were made to material that was outdated.
We welcome contributions and suggestions via GitHub Issue or Pull Request.
contact@ardc.edu.au
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Stokes, Liz (orcid: 0000-0002-2973-5647)
Burton, Nichola (orcid: 0000-0003-4470-4846)
Kelly, Andrew (orcid: 0000-0002-5377-5526)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Brownlee, Rowan (orcid: 0000-0002-1955-1262)
Levett, Kerry (orcid: 0000-0001-5963-0195)
Brady, Catherine (orcid: 0000-0002-7919-7592)
research data management, training material
ARDC FAIR Data 101 self-guided
FAIR Data 101 v3.0 is a self-guided course covering the FAIR Data principles
The FAIR Data 101 virtual course was designed and delivered by the ARDC Skilled Workforce Program twice in 2020 and has now been reworked as a self-guided course.
The course structure was based on 'FAIR Data in the...
Keywords: training material, FAIR data, video, webinar, activities, quiz, FAIR, research data management
ARDC FAIR Data 101 self-guided
https://zenodo.org/record/5094034
https://dresa.org.au/materials/ardc-fair-data-101-self-guided-bba41a59-8479-4f4f-b9ee-337b9eb294bf
FAIR Data 101 v3.0 is a self-guided course covering the FAIR Data principles
The FAIR Data 101 virtual course was designed and delivered by the ARDC Skilled Workforce Program twice in 2020 and has now been reworked as a self-guided course.
The course structure was based on 'FAIR Data in the Scholarly Communications Lifecycle', run by Natasha Simons at the FORCE11 Scholarly Communications Institute. These training materials are hosted on GitHub.
contact@ardc.edu.au
Stokes, Liz (orcid: 0000-0002-2973-5647)
Liffers, Matthias (orcid: 0000-0002-3639-2080)
Burton, Nichola (orcid: 0000-0003-4470-4846)
Martinez, Paula A. (orcid: 0000-0002-8990-1985)
Simons, Natasha (orcid: 0000-0003-0635-1998)
Russell, Keith (orcid: 0000-0001-5390-2719)
McCafferty, Siobhann (orcid: 0000-0002-2491-0995)
Ferrers, Richard (orcid: 0000-0002-2923-9889)
McEachern, Steve (orcid: 0000-0001-7848-4912)
Barlow, Melanie (orcid: 0000-0002-3956-5784)
Brady, Catherine (orcid: 0000-0002-7919-7592)
Brownlee, Rowan (orcid: 0000-0002-1955-1262)
Honeyman, Tom (orcid: 0000-0001-9448-4023)
Quiroga, Maria del Mar (orcid: 0000-0002-8943-2808)
training material, FAIR data, video, webinar, activities, quiz, FAIR, research data management