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12 materials found

Authors: Dow, Ellen (orcid: 0000-000...  or Belinda Weaver  or Amanda Miotto  or Tim Sherratt 

7 Steps towards Reproducible Research

This workshop aims to take you further down your reproducibility path, by providing concepts and tools you can use in your everyday workflows. It is discipline and experience agnostic, and no coding experience is needed.

We will also examine how Reproducible Research builds business continuity...

Keywords: reproducibility, Reproducibility, reproducible workflows

Resource type: full-course, tutorial

7 Steps towards Reproducible Research https://dresa.org.au/materials/7-steps-towards-reproducible-research This workshop aims to take you further down your reproducibility path, by providing concepts and tools you can use in your everyday workflows. It is discipline and experience agnostic, and no coding experience is needed. We will also examine how Reproducible Research builds business continuity into your research group, how the culture in your institute ecosystem can affect Reproducibility and how you can identify and address risks to your knowledge. The workshop can be used as self-paced or as an instructor Amanda Miotto - a.miotto@griffith.edu.au reproducibility, Reproducibility, reproducible workflows phd support
Sharing a Trove List as a CollectionBuilder exhibition

You’ve been collecting and annotating items relating to your research project in a Trove List. You’d like to display the contents of your list as an online exhibition for others to explore. CollectionBuilder creates online exhibitions using static web...

Keywords: Trove, Trove List, CollectionBuilder, collection, GLAM Workbench, exhibition, HASS

Resource type: tutorial

Sharing a Trove List as a CollectionBuilder exhibition https://dresa.org.au/materials/sharing-a-trove-list-as-a-collectionbuilder-exhibition You’ve been collecting and annotating items relating to your research project in a Trove List. You’d like to display the contents of your list as an online exhibition for others to explore. [CollectionBuilder](https://collectionbuilder.github.io/) creates online exhibitions using static web technologies. But how do you get your List data from Trove into CollectionBuilder? This tutorial from the Trove Data Guide walks through the complete process step-by-step. Tim Sherratt (tim@timsherratt.au) ARDC Community Data Lab Trove, Trove List, CollectionBuilder, collection, GLAM Workbench, exhibition, HASS
Create a layer in the Gazetteer of Historical Australian Placenames using metadata from Trove’s digitised maps

Trove includes thousands of digitised maps, created and published across the last few centuries. You want to create a collection of maps relating to your area of interest and explore it using the Gazetteer of Historical Australian Placenames (GHAP). You know it’s possible to add layers to GHAP,...

Keywords: Trove, maps, Gazetteer of Historical Australian Placenames (GHAP), GLAM Workbench, geospatial, HASS

Resource type: tutorial

Create a layer in the Gazetteer of Historical Australian Placenames using metadata from Trove’s digitised maps https://dresa.org.au/materials/create-a-layer-in-the-gazetteer-of-historical-australian-placenames-using-metadata-from-trove-s-digitised-maps Trove includes thousands of digitised maps, created and published across the last few centuries. You want to create a collection of maps relating to your area of interest and explore it using the Gazetteer of Historical Australian Placenames (GHAP). You know it’s possible to add layers to GHAP, but how do you get the data from Trove in a format that can be uploaded as a layer? This tutorial from the Trove Data Guide walks through the complete process step-by-step. Tim Sherratt (tim@timsherratt.au) ARDC Community Data Lab Trove, maps, Gazetteer of Historical Australian Placenames (GHAP), GLAM Workbench, geospatial, HASS
Comparing manuscript collections from Trove in Mirador

You want to compare the contents of two digitised manuscript collections and examine individual documents side-by-side. The Mirador viewer can be configured as a flexible, research workspace that displays multiple images from different sources, but how do you get...

Keywords: Trove, images, manuscripts, GLAM Workbench, IIIF, HASS, Mirador

Resource type: tutorial

Comparing manuscript collections from Trove in Mirador https://dresa.org.au/materials/comparing-manuscript-collections-in-mirador You want to compare the contents of two digitised manuscript collections and examine individual documents side-by-side. The [Mirador viewer](https://projectmirador.org/) can be configured as a flexible, research workspace that displays multiple images from different sources, but how do you get manuscript collections from Trove to Mirador? This tutorial from the Trove Data Guide walks through the complete process step-by-step. Tim Sherratt (tim@timsherratt.au) ARDC Community Data Lab Trove, images, manuscripts, GLAM Workbench, IIIF, HASS, Mirador
Working with a Trove collection in Tropy

You want to be able to work on a collection of digitised images from Trove on your desktop – adding notes, transcriptions, and annotations. Tropy is a useful tool for managing collections of research images, but how do you import a collection of images from Trove into...

Keywords: Trove, images, Tropy, IIIF, GLAM Workbench, HASS

Resource type: tutorial

Working with a Trove collection in Tropy https://dresa.org.au/materials/working-with-a-trove-collection-in-tropy You want to be able to work on a collection of digitised images from Trove on your desktop – adding notes, transcriptions, and annotations. [Tropy](https://tropy.org/) is a useful tool for managing collections of research images, but how do you import a collection of images from Trove into Tropy? This tutorial from the [Trove Data Guide](https://tdg.glam-workbench.net/home.html) walks through the complete process step-by-step. Tim Sherratt (tim@timsherratt.au) ARDC Community Data Lab Trove, images, Tropy, IIIF, GLAM Workbench, HASS
Analysing keywords in Trove’s digitised newspapers

You want to explore differences in language use across a collection of digitised newspaper articles. The Australian Text Analytics Platform provides a Keywords Analysis tool that helps you...

Keywords: text analysis, Australian Text Analytics Platform (ATAP), Trove, GLAM Workbench, Trove Newspaper and Gazette Harvester, newspapers, HASS

Resource type: tutorial

Analysing keywords in Trove’s digitised newspapers https://dresa.org.au/materials/analysing-keywords-in-trove-s-digitised-newspapers You want to explore differences in language use across a collection of digitised newspaper articles. The [Australian Text Analytics Platform](https://www.atap.edu.au/) provides a [Keywords Analysis tool](https://github.com/Australian-Text-Analytics-Platform/keywords-analysis) that helps you examine whether particular words are over or under-represented across collections of text. But how do get data from Trove’s newspapers to the keyword analysis tool? This tutorial from the [Trove Data Guide](https://tdg.glam-workbench.net/home.html) walks through the complete process step-by-step. Tim Sherratt (tim@timsherratt.au) ARDC Community Data Lab text analysis, Australian Text Analytics Platform (ATAP), Trove, GLAM Workbench, Trove Newspaper and Gazette Harvester, newspapers, HASS
WEBINAR: KBase - A knowledge base for systems biology

This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.

Event description 

Developed for bench biologists and bioinformaticians, The Department of Energy Systems...

Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology

WEBINAR: KBase - A knowledge base for systems biology https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology-653d9753-989d-4194-9230-6e2d90652955 This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021. Event description  Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function. This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. Files and materials included in this record: Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar Materials shared elsewhere: A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/tJ94i9gOJfU The slides are also available as Google slides:  https://tinyurl.com/KBase-webinar-slides Melissa Burke (melissa@biocommons.org.au) Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Introducing Computational Thinking

This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing.

The workshop will not teach computer programming per se. Instead...

Keywords: computational skills, data skills

Resource type: tutorial

Introducing Computational Thinking https://dresa.org.au/materials/introducing-computational-thinking This workshop is for researchers at all career stages who want to understand the uses and the building blocks of computational thinking. This skill is useful for all kinds of problem solving, whether in real life or in computing. The workshop will not teach computer programming per se. Instead it will cover the thought processes involved should you want to learn to program. s.stapleton@griffith.edu.au computational skills, data skills
WEBINAR: KBase - A knowledge base for systems biology

This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021.

Event description

Developed for bench biologists and bioinformaticians, The Department of Energy...

Keywords: Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology

WEBINAR: KBase - A knowledge base for systems biology https://dresa.org.au/materials/webinar-kbase-a-knowledge-base-for-systems-biology This record includes training materials associated with the Australian BioCommons webinar ‘KBase - A knowledge base for systems biology’. This webinar took place on 22 September 2021. **Event description** Developed for bench biologists and bioinformaticians, The Department of Energy Systems Biology Knowledgebase (KBase) is a free, open source, software and data science platform designed to meet the grand challenge of systems biology: predicting and designing biological function. This webinar will provide an overview of the KBase mission and user community, as well as a tour of the online platform and basic functionality. You’ll learn how KBase can support your research: Upload data, run analysis tools (Apps), share your analysis with collaborators, and publish your data and reproducible workflows. We’ll highlight a brand new feature that enables users to link environment and measurement data to sequencing data. You’ll also find out how KBase supports findable, accessible, interoperable, and reusable (FAIR) research by providing open, reproducible, shareable bioinformatics workflows. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. **Files and materials included in this record:** - Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. - Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. - Q&A for Australian BioCommons KBase Webinar [PDF]: Document containing answers to questions asked during the webinar and links to additional resources - Introduction to KBase: Australian BioCommons Webinar [PDF]: Slides presented during the webinar **Materials shared elsewhere:** A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/tJ94i9gOJfU The slides are also available as Google slides:  https://tinyurl.com/KBase-webinar-slides Melissa Burke (melissa@biocommons.org.au) Systems Biology, FAIR Research, Open Source Software, Metagenomics, Microbiology
Create a website resume

Written for the Qld Research Bazaar conference 2021, this self paced lesson breaks down how to use Github pages to make a resume, with a simple and basic template to start off with. It discusses how to use Markdown and minimum HTML to customize the template, and offers explanations on how the...

Keywords: personal development, website

Resource type: tutorial, guide

Create a website resume https://dresa.org.au/materials/create-a-website-resume Written for the Qld Research Bazaar conference 2021, this self paced lesson breaks down how to use Github pages to make a resume, with a simple and basic template to start off with. It discusses how to use Markdown and minimum HTML to customize the template, and offers explanations on how the components work together. a.miotto@griffith.edu.au personal development, website
10 Reproducible Research things - Building Business Continuity

The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are...

Keywords: reproducibility, data management

Resource type: tutorial, video

10 Reproducible Research things - Building Business Continuity https://dresa.org.au/materials/9-reproducible-research-things-building-business-continuity The idea that you can duplicate an experiment and get the same conclusion is the basis for all scientific discoveries. Reproducible research is data analysis that starts with the raw data and offers a transparent workflow to arrive at the same results and conclusions. However not all studies are replicable due to lack of information on the process. Therefore, reproducibility in research is extremely important. Researchers genuinely want to make their research more reproducible, but sometimes don’t know where to start and often don’t have the available time to investigate or establish methods on how reproducible research can speed up every day work. We aim for the philosophy “Be better than you were yesterday”. Reproducibility is a process, and we highlight there is no expectation to go from beginner to expert in a single workshop. Instead, we offer some steps you can take towards the reproducibility path following our Steps to Reproducible Research self paced program. Video: https://www.youtube.com/watch?v=bANTr9RvnGg Tutorial: https://guereslib.github.io/ten-reproducible-research-things/ a.miotto@griffith.edu.au; s.stapleton@griffith.edu.au; i.jennings@griffith.edu.au; Sharron Stapleton Isaac Jennings reproducibility, data management masters phd ecr researcher support
Data Storytelling

Nowadays, more information created than our audience could possibly analyse on their own! A study by Stanford professor Chip Heath found that during the recall of speeches, 63% of people remember stories and how they made them feel, but only 5% remember a single statistic. So, you should convert...

Keywords: data storytelling, data visualisation

Data Storytelling https://dresa.org.au/materials/data-storytelling Nowadays, more information created than our audience could possibly analyse on their own! A study by Stanford professor Chip Heath found that during the recall of speeches, 63% of people remember stories and how they made them feel, but only 5% remember a single statistic. So, you should convert your insights and discovery from data into stories to share with non-experts with a language they understand. But how? This tutorial helps you construct stories that incite an emotional response and create meaning and understanding for the audience by applying data storytelling techniques. m.yamaguchi@griffith.edu.au a.miotto@griffith.edu.au data storytelling, data visualisation support masters phd researcher