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Authors: Coddington, Paul (orcid: 00...  or Lange, Rebecca (orcid: 0000... 


WEBINAR: Where to go when your bioinformatics outgrows your compute

This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.

Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute...

Keywords: Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing

WEBINAR: Where to go when your bioinformatics outgrows your compute https://dresa.org.au/materials/webinar-where-to-go-when-your-bioinformatics-outgrows-your-compute-7a5a0ff8-8f4f-4fd0-af20-a88d515a6554 This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021. Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute resources. “I don’t know what compute resources I will need”, “My analysis won’t run and I don’t know why” and "Just getting it to work" are common pain points for researchers. In this webinar, you will learn how to understand the compute requirements for your bioinformatics workflows. You will also hear about ways of accessing compute that suits your needs as an Australian researcher, including Galaxy Australia, cloud and high-performance computing services offered by the Australian Research Data Commons, the National Compute Infrastructure (NCI) and Pawsey.  We also describe bioinformatics and computing support services available to Australian researchers.  This webinar was jointly organised with the Sydney Informatics Hub at the University of Sydney. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. Files and materials included in this record: Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. Where to go when your bioinformatics outgrows your compute - slides (PDF and PPTX): Slides presented during the webinar Australian research computing resources cheat sheet (PDF): A list of resources and useful links mentioned during the webinar. Materials shared elsewhere: A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/hNTbngSc-W0 Melissa Burke (melissa@biocommons.org.au) Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
Astronomy Data And Computing Services - Upskilling the Australian astronomy community

The Astronomy Data And Computing Services (ADACS) initiative has been working with the Australian astronomy community for just over 3 years now. Our vision is to deliver astronomy-focused training, support and expertise to maximise the scientific return on investments in astronomical data &...

Keywords: astronomy, data skills, eresearch skills, skills, computational skills, training, skills gaps, astronomy-focused training, training material

Astronomy Data And Computing Services - Upskilling the Australian astronomy community https://dresa.org.au/materials/astronomy-data-and-computing-services-upskilling-the-australian-astronomy-community-afea50d0-f7fe-4ad7-ad41-89fad7c14f65 The Astronomy Data And Computing Services (ADACS) initiative has been working with the Australian astronomy community for just over 3 years now. Our vision is to deliver astronomy-focused training, support and expertise to maximise the scientific return on investments in astronomical data & computing infrastructure. During these last 3 years, we have delivered dozens of face-to-face, hands-on workshops and created several hours worth of online tutorial materials. This talk will focus on our journey to deliver this computational skills training to the community, exploring how we chose different delivery pathways and content, based both on community input as well as our professional expertise and understanding of existing skill gaps. Most importantly we will discuss our plans for the future and how we are working on actively including the community in developing new training material beyond the usual skills survey. Come along to this talk if you would like to hear about a national effort to deliver computational skills training and would like to know more about potential new avenues to provide just-in-time training and how to collaborate with ADACS.  contact@ardc.edu.au astronomy, data skills, eresearch skills, skills, computational skills, training, skills gaps, astronomy-focused training, training material
Time to fill the gaps: Building out a national training inventory

 

This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting.

The newly formed group of...

Keywords: training inventory, training registry, national skills initiatives, training material

Time to fill the gaps: Building out a national training inventory https://dresa.org.au/materials/time-to-fill-the-gaps-building-out-a-national-training-inventory-cd4f10d8-83c0-4870-95e2-ee9ed4aa72c7   This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting. The newly formed group of eResearch support staff gathered by the Melbourne Data Analytics Platform (MDAP) and Sydney Informatics Hub (SIH) is one such group, as is the Lightweight Working Group (LWG): Researcher digital skills training data for enabling digital infrastructure use, spearheaded by University of Melbourne’s David Flanders during the pre-Skills Summit discussions. In this session we seek to build on the momentum, by including a hands-on working session. Participants are asked to come with information to share and questions they seek to answer. During the first half of this session, attendees will populate a public document with shareable training details. The goal is to at least double the size of the new cross-institutional national training collection started by the LWG. The second half of this session will be to ask questions to arrive at next steps. What do we need to do to continue building out this national training inventory and who will be in charge of maintaining and distributing the archive? What platforms exist and are used to capture training data and material and make it readily maintainable and findable? Can the material be reused and how do we recognise and capture re-use? Do we know about how to apply a license to our materials for appropriate reuse or do we need guidance? While there will likely be more questions than these, one question has been answered. When can we move from talking to doing? That time is now. contact@ardc.edu.au training inventory, training registry, national skills initiatives, training material
WEBINAR: Where to go when your bioinformatics outgrows your compute

This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.

Bioinformatics analyses are often complex, requiring multiple software tools and specialised...

Keywords: Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing

WEBINAR: Where to go when your bioinformatics outgrows your compute https://dresa.org.au/materials/webinar-where-to-go-when-your-bioinformatics-outgrows-your-compute This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021. Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute resources. “I don’t know what compute resources I will need”, “My analysis won’t run and I don’t know why” and "Just getting it to work" are common pain points for researchers. In this webinar, you will learn how to understand the compute requirements for your bioinformatics workflows. You will also hear about ways of accessing compute that suits your needs as an Australian researcher, including Galaxy Australia, cloud and high-performance computing services offered by the Australian Research Data Commons, the National Compute Infrastructure (NCI) and Pawsey.  We also describe bioinformatics and computing support services available to Australian researchers.  This webinar was jointly organised with the Sydney Informatics Hub at the University of Sydney. Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. **Files and materials included in this record:** - Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. - Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file. - Where to go when your bioinformatics outgrows your compute - slides (PDF and PPTX): Slides presented during the webinar - Australian research computing resources cheat sheet (PDF): A list of resources and useful links mentioned during the webinar. **Materials shared elsewhere:** A recording of the webinar is available on the Australian BioCommons YouTube Channel: https://youtu.be/hNTbngSc-W0 Melissa Burke (melissa@biocommons.org.au) Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
Time to fill the gaps: Building out a national training inventory

 

This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting.

The newly formed group of...

Keywords: training inventory, training registry, national skills initiatives, training material

Time to fill the gaps: Building out a national training inventory https://dresa.org.au/materials/time-to-fill-the-gaps-building-out-a-national-training-inventory   This community discussion seeks to bring together the instructors and facilitators tasked with upskilling researchers and support staff. While this collective dialogue among instructors is not new, what is new is the traction that various groups are getting. The newly formed group of eResearch support staff gathered by the Melbourne Data Analytics Platform (MDAP) and Sydney Informatics Hub (SIH) is one such group, as is the Lightweight Working Group (LWG): Researcher digital skills training data for enabling digital infrastructure use, spearheaded by University of Melbourne’s David Flanders during the pre-Skills Summit discussions. In this session we seek to build on the momentum, by including a hands-on working session. Participants are asked to come with information to share and questions they seek to answer. During the first half of this session, attendees will populate a public document with shareable training details. The goal is to at least double the size of the new cross-institutional national training collection started by the LWG. The second half of this session will be to ask questions to arrive at next steps. What do we need to do to continue building out this national training inventory and who will be in charge of maintaining and distributing the archive? What platforms exist and are used to capture training data and material and make it readily maintainable and findable? Can the material be reused and how do we recognise and capture re-use? Do we know about how to apply a license to our materials for appropriate reuse or do we need guidance? While there will likely be more questions than these, one question has been answered. When can we move from talking to doing? That time is now. contact@ardc.edu.au training inventory, training registry, national skills initiatives, training material
Astronomy Data And Computing Services - Upskilling the Australian astronomy community

The Astronomy Data And Computing Services (ADACS) initiative has been working with the Australian astronomy community for just over 3 years now. Our vision is to deliver astronomy-focused training, support and expertise to maximise the scientific return on investments in astronomical data &...

Keywords: astronomy, data skills, eresearch skills, skills, computational skills, training, skills gaps, astronomy-focused training, training material

Astronomy Data And Computing Services - Upskilling the Australian astronomy community https://dresa.org.au/materials/astronomy-data-and-computing-services-upskilling-the-australian-astronomy-community The Astronomy Data And Computing Services (ADACS) initiative has been working with the Australian astronomy community for just over 3 years now. Our vision is to deliver astronomy-focused training, support and expertise to maximise the scientific return on investments in astronomical data & computing infrastructure. During these last 3 years, we have delivered dozens of face-to-face, hands-on workshops and created several hours worth of online tutorial materials. This talk will focus on our journey to deliver this computational skills training to the community, exploring how we chose different delivery pathways and content, based both on community input as well as our professional expertise and understanding of existing skill gaps. Most importantly we will discuss our plans for the future and how we are working on actively including the community in developing new training material beyond the usual skills survey. Come along to this talk if you would like to hear about a national effort to deliver computational skills training and would like to know more about potential new avenues to provide just-in-time training and how to collaborate with ADACS.  contact@ardc.edu.au astronomy, data skills, eresearch skills, skills, computational skills, training, skills gaps, astronomy-focused training, training material