WEBINAR: Where to go when your bioinformatics outgrows your compute
This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.
Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute...
Keywords: Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
WEBINAR: Where to go when your bioinformatics outgrows your compute
https://zenodo.org/records/5240578
https://dresa.org.au/materials/webinar-where-to-go-when-your-bioinformatics-outgrows-your-compute-7a5a0ff8-8f4f-4fd0-af20-a88d515a6554
This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.
Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute resources. “I don’t know what compute resources I will need”, “My analysis won’t run and I don’t know why” and "Just getting it to work" are common pain points for researchers. In this webinar, you will learn how to understand the compute requirements for your bioinformatics workflows. You will also hear about ways of accessing compute that suits your needs as an Australian researcher, including Galaxy Australia, cloud and high-performance computing services offered by the Australian Research Data Commons, the National Compute Infrastructure (NCI) and Pawsey. We also describe bioinformatics and computing support services available to Australian researchers.
This webinar was jointly organised with the Sydney Informatics Hub at the University of Sydney.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
Where to go when your bioinformatics outgrows your compute - slides (PDF and PPTX): Slides presented during the webinar
Australian research computing resources cheat sheet (PDF): A list of resources and useful links mentioned during the webinar.
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/hNTbngSc-W0
Melissa Burke (melissa@biocommons.org.au)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Sadsad, Rosemarie (orcid: 0000-0003-2488-953X)
Coddington, Paul (orcid: 0000-0003-1336-9686)
Gladman, Simon (orcid: 0000-0002-6100-4385)
Edberg, Roger
Shaikh, Javed
Cytowski, Maciej (orcid: 0000-0002-0007-0979)
Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
WEBINAR: High performance bioinformatics: submitting your best NCMAS application
This record includes training materials associated with the Australian BioCommons webinar ‘High performance bioinformatics: submitting your best NCMAS application’. This webinar took place on 20 August 2021.
Bioinformaticians are increasingly turning to specialised compute infrastructure and...
Keywords: Computational Biology, Bioinformatics, High Performance Computing, HPC, NCMAS
WEBINAR: High performance bioinformatics: submitting your best NCMAS application
https://zenodo.org/records/5239883
https://dresa.org.au/materials/webinar-high-performance-bioinformatics-submitting-your-best-ncmas-application-ee80822f-74ac-41af-a5a4-e162c10e6d78
This record includes training materials associated with the Australian BioCommons webinar ‘High performance bioinformatics: submitting your best NCMAS application’. This webinar took place on 20 August 2021.
Bioinformaticians are increasingly turning to specialised compute infrastructure and efficient, scalable workflows as their research becomes more data intensive. Australian researchers that require extensive compute resources to process large datasets can apply for access to national high performance computing facilities (e.g. Pawsey and NCI) to power their research through the National Computational Merit Allocation Scheme (NCMAS). NCMAS is a competitive, merit-based scheme and requires applicants to carefully consider how the compute infrastructure and workflows will be applied.
This webinar provides life science researchers with insights into what makes a strong NCMAS application, with a focus on the technical assessment, and how to design and present effective and efficient bioinformatic workflows for the various national compute facilities. It will be followed by a short Q&A session.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
High performance bioinformatics: submitting your best NCMAS application - slides (PDF and PPTX): Slides presented during the webinar
Materials shared elsewhere:
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/HeFGjguwS0Y
Melissa Burke (melissa@biocommons.org.au)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Computational Biology, Bioinformatics, High Performance Computing, HPC, NCMAS
WORKSHOP: RNA-Seq: reads to differential genes and pathways
This record includes training materials associated with the Australian BioCommons workshop ‘RNA-Seq: reads to differential genes and pathways’. This workshop took place over two, 3.5 hour sessions on 27 and 28 September 2022.
Event description
RNA sequencing (RNA-seq) is a common method used to...
Keywords: Bioinformatics, Analysis, Transcriptomics, RNA-seq, Workflows, Nextflow, nf-co.re
WORKSHOP: RNA-Seq: reads to differential genes and pathways
https://zenodo.org/records/7439804
https://dresa.org.au/materials/workshop-rna-seq-reads-to-differential-genes-and-pathways-5a384156-d3de-4d5d-9797-e689bf6592f8
This record includes training materials associated with the Australian BioCommons workshop ‘RNA-Seq: reads to differential genes and pathways’. This workshop took place over two, 3.5 hour sessions on 27 and 28 September 2022.
Event description
RNA sequencing (RNA-seq) is a common method used to understand the differences in gene expression and molecular pathways between two or more groups. This workshop introduces the fundamental concepts of RNA sequencing experiments and will allow you to try out the analysis using data from a study of Williams-Beuren Syndrome, a rare disease.
In the first part of the workshop you will learn how to convert sequence reads into analysis ready count data. To do this we will use nf-core/rnaseq - a portable, scalable, reproducible and publicly available workflow on Pawsey Nimbus Cloud. In the second part of the workshop you will use the count data you created to identify differential genes and pathways using R/Rstudio. By the end of the workshop, you should be able to perform your own RNA-seq analysis for differential gene expression and pathway analysis!
This workshop is presented by the Australian BioCommons and Sydney Informatics Hub with the assistance of a network of facilitators from the national Bioinformatics Training Cooperative.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
Files and materials included in this record:
Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
RNAseq reads to differential genes and pathways - Additional Resources (PDF): Additional resources compiled by the Sydney Informatics Hub
rnaseq_DE_analysis_Day2.html: HTML version of code used on day 2 of the workshop
rnaseq_DE_analysis_Day2.Rmd: R Markdown version of code used on day 2 of the workshop
RNAseq reads to differential genes and pathways_Q_and_A (PDF): Archive of questions and their answers from the workshop Slack Channel.
Materials shared elsewhere:
This workshop follows the tutorial ‘RNA-seq: reads to differential gene expression workshop series’ developed by the Sydney Informatics Hub.
https://sydney-informatics-hub.github.io/training.RNAseq.series-quarto/
Melissa Burke (melissa@biocommons.org.au)
Deshpande, Nandan (orcid: 0000-0002-0324-8728)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Beecroft, Sarah (orcid: 0000-0002-3935-2279)
Morgan, Steven (orcid: 0000-0001-6038-6126)
Bioinformatics, Analysis, Transcriptomics, RNA-seq, Workflows, Nextflow, nf-co.re
ARDC digital research capabilities and skills framework
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role...
Keywords: training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
ARDC digital research capabilities and skills framework
https://zenodo.org/records/6558642
https://dresa.org.au/materials/ardc-digital-research-capabilities-and-skills-framework-3b376311-87dd-470f-bb8d-e99459434c97
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role profiles
Learning paths
Skills/Data roles matrix
contact@ardc.edu.au
ARDC
Savill, Jo (type: Editor)
Duncan, Ian (type: Editor)
Unsworth, Kathryn (type: Editor)
Murphy, Paul (type: Editor)
training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce...
Keywords: international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
https://zenodo.org/records/4289356
https://dresa.org.au/materials/oecd-report-building-digital-workforce-capacity-and-skills-for-data-intensive-science-2020-a456ae97-9241-4fc6-b7f9-57c201479317
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce capacity needed for data-intensive science, based on analysis of best practice.
The presentation highlights:
- Digital workforce capacity and COVID19: the importance of digital skills, the need for shared access to open data, software and code, and the shortfall in skills to enable a comprehensive response to such emergencies
- The ongoing need for a digital skilled workforce for data-intensive science
- Five focus areas in the report include:
1. Enablers for digital workforce capacity development
2. Defining needs: digital skills, frameworks and roles
3. Provision of training
4. Community development
5. Career paths and reward structures - Recommendations for actors incl. universities, national or regional governments
contact@ardc.edu.au
Barker, Michelle (orcid: 0000-0002-3623-172X)
international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material
Digital research skills trainer certification guide
This guide to certification is for those who currently design, develop and deliver training as full-time trainers or where training is part of their role, and for those who are considering becoming a skills trainer.
Keywords: digital research skills training, trainer certification, training material
Digital research skills trainer certification guide
https://zenodo.org/records/7587668
https://dresa.org.au/materials/digital-research-skills-trainer-certification-guide-b70e3945-8ef1-4cc1-8963-3169bcfe0109
This guide to certification is for those who currently design, develop and deliver training as full-time trainers or where training is part of their role, and for those who are considering becoming a skills trainer.
contact@ardc.edu.au
ARDC
digital research skills training, trainer certification, training material
Guide to designing digital research skills training materials: textual materials
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Textual Materials aims to support training materials creators, trainers and national training infrastructure providers in the creation of textual guides while also encouraging the sharing...
Keywords: digital research skills training, learning design, textual training materials, training material
Guide to designing digital research skills training materials: textual materials
https://zenodo.org/records/7587651
https://dresa.org.au/materials/guide-to-designing-digital-research-skills-training-materials-textual-materials-8b685c24-0362-4cc9-9908-63227ecf0e0f
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Textual Materials aims to support training materials creators, trainers and national training infrastructure providers in the creation of textual guides while also encouraging the sharing and reuse of their training materials. It aims to facilitate the design, development and delivery of textual guides on digital research and data skills in alignment with best practices in learning and training.
This tool is informed by the Universal Design for Learning principles which aims to eliminate barriers in the design of learning materials to make content accessible to all.
contact@ardc.edu.au
ARDC
digital research skills training, learning design, textual training materials, training material
Guide to designing digital research skills training materials: presentations and videos
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Presentations and Videos aims to support training materials creators, trainers and national training infrastructure providers in the design and delivery of presentations and videos while...
Keywords: digital research skills training, learning design, training presentations, training videos, training material
Guide to designing digital research skills training materials: presentations and videos
https://zenodo.org/records/7587657
https://dresa.org.au/materials/guide-to-designing-digital-research-skills-training-materials-presentations-and-videos-8d8c091b-c719-4200-874a-eb05a81bc49a
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Presentations and Videos aims to support training materials creators, trainers and national training infrastructure providers in the design and delivery of presentations and videos while also encouraging the sharing and reuse of their training materials. It aims to facilitate the design, development and delivery of digital research and data skills videos and presentations in alignment with best practices for learning and training.
This tool is informed by the Universal Design for Learning framework, which aims to eliminate barriers in the design of learning materials and make content accessible to all.
contact@ardc.edu.au
ARDC
digital research skills training, learning design, training presentations, training videos, training material
Digital research skills trainer certification guide
This guide to certification is for those who currently design, develop and deliver training as full-time trainers or where training is part of their role, and for those who are considering becoming a skills trainer.
Keywords: digital research skills training, trainer certification, training material
Digital research skills trainer certification guide
https://zenodo.org/record/7587668
https://dresa.org.au/materials/digital-research-skills-trainer-certification-guide
This guide to certification is for those who currently design, develop and deliver training as full-time trainers or where training is part of their role, and for those who are considering becoming a skills trainer.
contact@ardc.edu.au
ARDC
digital research skills training, trainer certification, training material
Guide to designing digital research skills training materials: presentations and videos
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Presentations and Videos aims to support training materials creators, trainers and national training infrastructure providers in the design and delivery of presentations and videos while...
Keywords: digital research skills training, learning design, training presentations, training videos, training material
Guide to designing digital research skills training materials: presentations and videos
https://zenodo.org/record/7587657
https://dresa.org.au/materials/guide-to-designing-digital-research-skills-training-materials-presentations-and-videos
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Presentations and Videos aims to support training materials creators, trainers and national training infrastructure providers in the design and delivery of presentations and videos while also encouraging the sharing and reuse of their training materials. It aims to facilitate the design, development and delivery of digital research and data skills videos and presentations in alignment with best practices for learning and training.
This tool is informed by the Universal Design for Learning framework, which aims to eliminate barriers in the design of learning materials and make content accessible to all.
contact@ardc.edu.au
ARDC
digital research skills training, learning design, training presentations, training videos, training material
Guide to designing digital research skills training materials: textual materials
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Textual Materials aims to support training materials creators, trainers and national training infrastructure providers in the creation of textual guides while also encouraging the sharing...
Keywords: digital research skills training, learning design, textual training materials, training material
Guide to designing digital research skills training materials: textual materials
https://zenodo.org/record/7587651
https://dresa.org.au/materials/guide-to-designing-digital-research-skills-training-materials-textual-materials
The Australian Research Data Commons (ARDC) Guide to Designing Digital Research Skills Training Materials: Textual Materials aims to support training materials creators, trainers and national training infrastructure providers in the creation of textual guides while also encouraging the sharing and reuse of their training materials. It aims to facilitate the design, development and delivery of textual guides on digital research and data skills in alignment with best practices in learning and training.
This tool is informed by the Universal Design for Learning principles which aims to eliminate barriers in the design of learning materials to make content accessible to all.
contact@ardc.edu.au
ARDC
digital research skills training, learning design, textual training materials, training material
WORKSHOP: RNA-Seq: reads to differential genes and pathways
This record includes training materials associated with the Australian BioCommons workshop ‘RNA-Seq: reads to differential genes and pathways’. This workshop took place over two, 3.5 hour sessions on 27 and 28 September 2022.
Event description
RNA sequencing (RNA-seq) is a common method...
Keywords: Bioinformatics, Analysis, Transcriptomics, RNA-seq, Workflows, Nextflow, nf-co.re
WORKSHOP: RNA-Seq: reads to differential genes and pathways
https://zenodo.org/record/7439804
https://dresa.org.au/materials/workshop-rna-seq-reads-to-differential-genes-and-pathways
This record includes training materials associated with the Australian BioCommons workshop ‘RNA-Seq: reads to differential genes and pathways’. This workshop took place over two, 3.5 hour sessions on 27 and 28 September 2022.
**Event description**
RNA sequencing (RNA-seq) is a common method used to understand the differences in gene expression and molecular pathways between two or more groups. This workshop introduces the fundamental concepts of RNA sequencing experiments and will allow you to try out the analysis using data from a study of Williams-Beuren Syndrome, a rare disease.
In the first part of the workshop you will learn how to convert sequence reads into analysis ready count data. To do this we will use nf-core/rnaseq - a portable, scalable, reproducible and publicly available workflow on Pawsey Nimbus Cloud. In the second part of the workshop you will use the count data you created to identify differential genes and pathways using R/Rstudio. By the end of the workshop, you should be able to perform your own RNA-seq analysis for differential gene expression and pathway analysis!
This workshop is presented by the Australian BioCommons and Sydney Informatics Hub with the assistance of a network of facilitators from the national Bioinformatics Training Cooperative.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
**Files and materials included in this record:**
* Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
* Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
* RNAseq reads to differential genes and pathways - Additional Resources (PDF): Additional resources compiled by the Sydney Informatics Hub
* rnaseq_DE_analysis_Day2.html: HTML version of code used on day 2 of the workshop
* rnaseq_DE_analysis_Day2.Rmd: R Markdown version of code used on day 2 of the workshop
* RNAseq reads to differential genes and pathways_Q_and_A (PDF): Archive of questions and their answers from the workshop Slack Channel.
**Materials shared elsewhere:**
This workshop follows the tutorial ‘RNA-seq: reads to differential gene expression workshop series’ developed by the Sydney Informatics Hub.
https://sydney-informatics-hub.github.io/training.RNAseq.series-quarto/
Melissa Burke (melissa@biocommons.org.au)
Deshpande, Nandan (orcid: 0000-0002-0324-8728)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Beecroft, Sarah (orcid: 0000-0002-3935-2279)
Morgan, Steven (orcid: 0000-0001-6038-6126)
Bioinformatics, Analysis, Transcriptomics, RNA-seq, Workflows, Nextflow, nf-co.re
ARDC digital research capabilities and skills framework
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role...
Keywords: training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
ARDC digital research capabilities and skills framework
https://zenodo.org/record/6558642
https://dresa.org.au/materials/ardc-digital-research-capabilities-and-skills-framework-e0acf524-0666-466c-ac93-f13c133b03cf
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role profiles
Learning paths
Skills/Data roles matrix
contact@ardc.edu.au
ARDC
Savill, Jo (type: Editor)
Duncan, Ian (type: Editor)
Unsworth, Kathryn (type: Editor)
Murphy, Paul (type: Editor)
training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
ARDC digital research capabilities and skills framework
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role...
Keywords: training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
ARDC digital research capabilities and skills framework
https://zenodo.org/record/6540798
https://dresa.org.au/materials/ardc-digital-research-capabilities-and-skills-framework
This informational flyer outlines the value of skills frameworks and describes at a high level the various elements of the ARDC's Capabilities and Skills Framework.
Capabilities and Skills Landscape
Glossary - Framework terminology
Data and Digital Research roles
Skills/Role profiles
Learning paths
Skills/Data roles matrix
Kathryn Unsworth (kathryn.unsworth@ardc.edu.au)
ARDC
Savill, Jo (type: Editor)
Duncan, Ian (type: Editor)
Unsworth, Kathryn (type: Editor)
Murphy, Paul (type: Editor)
training material, skills framework, ARDC skills framework, ARDC capabilities framework, national skills framework
WEBINAR: Where to go when your bioinformatics outgrows your compute
This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.
Bioinformatics analyses are often complex, requiring multiple software tools and specialised...
Keywords: Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
WEBINAR: Where to go when your bioinformatics outgrows your compute
https://zenodo.org/record/5240578
https://dresa.org.au/materials/webinar-where-to-go-when-your-bioinformatics-outgrows-your-compute
This record includes training materials associated with the Australian BioCommons webinar ‘Where to go when your bioinformatics outgrows your compute’. This webinar took place on 19 August 2021.
Bioinformatics analyses are often complex, requiring multiple software tools and specialised compute resources. “I don’t know what compute resources I will need”, “My analysis won’t run and I don’t know why” and "Just getting it to work" are common pain points for researchers. In this webinar, you will learn how to understand the compute requirements for your bioinformatics workflows. You will also hear about ways of accessing compute that suits your needs as an Australian researcher, including Galaxy Australia, cloud and high-performance computing services offered by the Australian Research Data Commons, the National Compute Infrastructure (NCI) and Pawsey. We also describe bioinformatics and computing support services available to Australian researchers.
This webinar was jointly organised with the Sydney Informatics Hub at the University of Sydney.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
**Files and materials included in this record:**
- Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
- Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
- Where to go when your bioinformatics outgrows your compute - slides (PDF and PPTX): Slides presented during the webinar
- Australian research computing resources cheat sheet (PDF): A list of resources and useful links mentioned during the webinar.
**Materials shared elsewhere:**
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/hNTbngSc-W0
Melissa Burke (melissa@biocommons.org.au)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Sadsad, Rosemarie (orcid: 0000-0003-2488-953X)
Coddington, Paul (orcid: 0000-0003-1336-9686)
Gladman, Simon (orcid: 0000-0002-6100-4385)
Edberg, Roger
Shaikh, Javed
Cytowski, Maciej (orcid: 0000-0002-0007-0979)
Computational Biology, Bioinformatics, High performance computing, HPC, Galaxy Australia, Nectar Research Cloud, Pawsey Supercomputing Centre, NCI, NCMAS, Cloud computing
WEBINAR: High performance bioinformatics: submitting your best NCMAS application
This record includes training materials associated with the Australian BioCommons webinar ‘High performance bioinformatics: submitting your best NCMAS application’. This webinar took place on 20 August 2021.
Bioinformaticians are increasingly turning to specialised compute infrastructure and...
Keywords: Computational Biology, Bioinformatics, High Performance Computing, HPC, NCMAS
WEBINAR: High performance bioinformatics: submitting your best NCMAS application
https://zenodo.org/record/5239883
https://dresa.org.au/materials/webinar-high-performance-bioinformatics-submitting-your-best-ncmas-application
This record includes training materials associated with the Australian BioCommons webinar ‘High performance bioinformatics: submitting your best NCMAS application’. This webinar took place on 20 August 2021.
Bioinformaticians are increasingly turning to specialised compute infrastructure and efficient, scalable workflows as their research becomes more data intensive. Australian researchers that require extensive compute resources to process large datasets can apply for access to national high performance computing facilities (e.g. Pawsey and NCI) to power their research through the National Computational Merit Allocation Scheme (NCMAS). NCMAS is a competitive, merit-based scheme and requires applicants to carefully consider how the compute infrastructure and workflows will be applied.
This webinar provides life science researchers with insights into what makes a strong NCMAS application, with a focus on the technical assessment, and how to design and present effective and efficient bioinformatic workflows for the various national compute facilities. It will be followed by a short Q&A session.
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
**Files and materials included in this record:**
- Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.
- Index of training materials (PDF): List and description of all materials associated with this event including the name, format, location and a brief description of each file.
- High performance bioinformatics: submitting your best NCMAS application - slides (PDF and PPTX): Slides presented during the webinar
**Materials shared elsewhere:**
A recording of the webinar is available on the Australian BioCommons YouTube Channel:
https://youtu.be/HeFGjguwS0Y
Melissa Burke (melissa@biocommons.org.au)
Samaha, Georgina (orcid: 0000-0003-0419-1476)
Chew, Tracy (orcid: 0000-0001-9529-7705)
Computational Biology, Bioinformatics, High Performance Computing, HPC, NCMAS
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce...
Keywords: international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material
OECD Report - Building digital workforce capacity and skills for data-intensive science (2020)
https://zenodo.org/record/4289356
https://dresa.org.au/materials/oecd-report-building-digital-workforce-capacity-and-skills-for-data-intensive-science-2020
As a lead contributor to the OECD's Building Digital Workforce Capacity and Skills for Data-Intensive Science (2020) report, Dr Michelle Barker outlines in this presentation the goal of the report, i.e. to make recommendations to policy makers on how to facilitate the digital workforce capacity needed for data-intensive science, based on analysis of best practice.
The presentation highlights:
- Digital workforce capacity and COVID19: the importance of digital skills, the need for shared access to open data, software and code, and the shortfall in skills to enable a comprehensive response to such emergencies
- The ongoing need for a digital skilled workforce for data-intensive science
- Five focus areas in the report include:
1. Enablers for digital workforce capacity development
2. Defining needs: digital skills, frameworks and roles
3. Provision of training
4. Community development
5. Career paths and reward structures - Recommendations for actors incl. universities, national or regional governments
contact@ardc.edu.au
Barker, Michelle (orcid: 0000-0002-3623-172X)
international skills initiatives, skills, training, OECD, EOSC, Capability building, Skills uplift, skills development, digital skilled workforce, training material