WORKSHOP: Genetic Outlier Analysis

This record includes training materials associated with the Australian BioCommons workshop ‘Genetic Outlier Analysis’. 
These workshops took place on:

27 - 28 February 2024: Online via Zoom
10 - 11 April 2024: In person in Melbourne
4 - 5 July 2024: In person in Sydney 

Event description
There are many interesting patterns that you can extract from genetic variant data. This can include patterns of linkage, balancing selection, or even inbreeding signals. One of the most common approaches is to find sites on the genome that are under selection. 
This workshop introduces the basics of genetic selection analysis. It will step you through the process of identifying signals of selection using your own data (or an example genomic dataset) using the outlier analysis method. 
Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event.
This workshop is presented by the Australian BioCommons and the Genetics Society of AustralAsia
Lead trainer: 

Dr Katarina Stuart, Research Fellow, University of Auckland. 

Facilitators:

Adele Barugahare, Monash Genomics and Bioinformatics Platform 

Dr Georgina Samaha, Sydney Informatics Hub, University of Sydney 

Dr Ching-Yu Lu, Sydney Informatics Hub, University of Sydney

Soleille Miller, University of NSW

Dr Nandan Deshpande, Sydney Informatics Hub, University of Sydney

 
Infrastructure provision: Audrey Stott, Pawsey Supercomputing Research Centre
Host: Dr Melissa Burke, Australian BioCommons
Training materials
Files and materials included in this record:

Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc.

Schedules describing the timing of sessions for the in person and online events

Materials shared elsewhere:
These workshops followed the materials developed by Dr Katarina Stuart

https://github.com/katarinastuart/Ev1_SelectionMetaAnalysis

 

DOI: 10.5281/zenodo.14676276

Licence: Creative Commons Attribution 4.0

Contact: Melissa Burke (melissa@biocommons.org.au)

Keywords: Bioinformatics, Genetics


Additional information

Status: Active

Authors: Stuart, Katarina (orcid: 0000-0002-0386-4600), Samaha, Georgina (orcid: 0000-0003-0419-1476), Barugahare, Adele (orcid: 0000-0002-8976-0094), Miller, Solleile (orcid: 0000-0002-7880-6501), Deshpande, Nandan, Lu, Ching-Yu

WORKSHOP: Genetic Outlier Analysis https://dresa.org.au/materials/workshop-genetic-outlier-analysis This record includes training materials associated with the Australian BioCommons workshop ‘Genetic Outlier Analysis’.  These workshops took place on: 27 - 28 February 2024: Online via Zoom 10 - 11 April 2024: In person in Melbourne 4 - 5 July 2024: In person in Sydney  Event description There are many interesting patterns that you can extract from genetic variant data. This can include patterns of linkage, balancing selection, or even inbreeding signals. One of the most common approaches is to find sites on the genome that are under selection.  This workshop introduces the basics of genetic selection analysis. It will step you through the process of identifying signals of selection using your own data (or an example genomic dataset) using the outlier analysis method.  Materials are shared under a Creative Commons Attribution 4.0 International agreement unless otherwise specified and were current at the time of the event. This workshop is presented by the Australian BioCommons and the Genetics Society of AustralAsia Lead trainer:  Dr Katarina Stuart, Research Fellow, University of Auckland.  Facilitators: Adele Barugahare, Monash Genomics and Bioinformatics Platform  Dr Georgina Samaha, Sydney Informatics Hub, University of Sydney  Dr Ching-Yu Lu, Sydney Informatics Hub, University of Sydney Soleille Miller, University of NSW Dr Nandan Deshpande, Sydney Informatics Hub, University of Sydney   Infrastructure provision: Audrey Stott, Pawsey Supercomputing Research Centre Host: Dr Melissa Burke, Australian BioCommons Training materials Files and materials included in this record: Event metadata (PDF): Information about the event including, description, event URL, learning objectives, prerequisites, technical requirements etc. Schedules describing the timing of sessions for the in person and online events Materials shared elsewhere: These workshops followed the materials developed by Dr Katarina Stuart https://github.com/katarinastuart/Ev1_SelectionMetaAnalysis   Melissa Burke (melissa@biocommons.org.au) Bioinformatics, Genetics