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City: Saint Lucia  or South Brisbane  or Online 

  • WEBINAR: Deciphering AI for the Life Sciences

    18 March 2025

    WEBINAR: Deciphering AI for the Life Sciences https://dresa.org.au/events/webinar-deciphering-ai-for-the-life-sciences Curious about how Artificial Intelligence (AI) is transforming life sciences? AI is reshaping life sciences by enabling researchers to analyse complex datasets, automate workflows, and gain deeper insights into biological processes. This introductory webinar will break down AI concepts, clarify key terminology, and showcase real-world examples of AI applications in the life sciences. **Learning outcomes** This webinar, will help you: - Define key AI-related terms - Understand the historical progression of AI and how it has evolved to impact life sciences - Recognise key AI applications in specific life science domains - Understand the benefits and limitations of AI - Navigate available learning resources to explore AI further **Speakers**: Dr Benjamin Goudey, AI Technical Lead, Australian BioCommons **Date/Time**: 18 March 2024, 12 - 1 pm AEDT/ 11am - 12 pm AEST / 11:30am - 12:30 pm ACDT / 9 - 10 am AWST [check in your timezone](https://www.timeanddate.com/worldclock/fixedtime.html?msg=Deciphering+AI+for+the+Life+Sciences&iso=20250318T12&p1=152&ah=1) **Who the webinar is for**: - Wet lab scientists with minimal computational background and eager to apply AI to their experimental workflows; - Bioinformaticians/computational scientists with some programming experience but new to AI, interested in integrating AI in their pipelines; - Research leads and decision-makers interested in the strategic impact of AI. **How to join**: This webinar is free to join but you must register for a place in advance. [Register here](https://unimelb.zoom.us/webinar/register/WN_fdkrX7C3Q1qn21W1MSFXDA) 2025-03-18 12:00:00 UTC 2025-03-18 13:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all BioinformaticsIntroductoryAILife Science

  • WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive

    24 March - 4 April 2025

    WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive https://dresa.org.au/events/workshop-series-submitting-sequencing-data-and-genome-assemblies-to-the-european-nucleotide-archive The European Nucleotide Archive (ENA) is the European node of the International Nucleotide Sequence Database Collaboration (INSDC), providing a comprehensive record of the world’s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. The three INSDC members (ENA, NCBI-SRA and DDBJ-SRA) routinely exchange data which ensures nucleotide data is archived and shared across geographically dispersed locations (Europe, USA and Japan). The ENA is provided by EMBL’s European Bioinformatics Institute, EMBL-EBI. ENA team members Dr Joana Pauperio and Maira Ihsan will deliver a series of related workshops on submitting raw read sequencing, Metagenome-Assembled Genome (MAG), environmental DNA (eDNA) and genome assembly and annotation data to ENA.* Each workshop will begin with an introduction to the ENA data and metadata model. You will then be guided through hands-on exercises using example data sets to practice data submission via one of three submission routes: Interactive web-based submission: these are completed by filling out web forms in your browser and downloading template spreadsheets that can be completed off-line and uploaded to ENA. Command-line based submission: Data submissions of this type are completed via the command line using ENA's bespoke Webin-CLI program. This validates your submissions entirely before you complete them, allowing you maximum control of the process. Webin-CLI is the only way to submit assembled genomes and transcriptomes. Programmatic submission: these are completed by preparing your submissions as XML/JSON documents and either sending them to ENA using a program such as cURL or using ENA's Webin Portal. *This series is designed with flexibility in mind. You can apply to attend one or more workshops \- choose the workshop(s) most relevant to you.* | Date/Time | Workshop title| Dataset | Submission route | | ----- | ----- | ----- | ----- | | 25 March 2025 1 \- 4 pm AEDT | Submitting raw read sequencing data using interactive web-based tools | Raw reads | Interactive web-based submission | | 26 March 2025 1 \- 4 pm AEDT | Submitting raw read sequencing data using programmatic tools | Raw reads | Programmatic submission | | 27 March 2025 1 \- 3 pm AEDT | Submitting raw-read sequencing data using command line based tools | Raw reads | Command-line submission | | 31 March 2025 1 \- 4 pm AEDT | Submitting genome assembly and annotation data using the command line | Genome assembly and annotation data | Command-line submission | | 1 April 2025 1 \- 4 pm AEDT | Submitting Metagenome-Assembled Genome (MAG) data to ENA and MGNify using the command line | Metagenome-Assembled Genome (MAG) | Command-line submission | | 2 April 2025 1 \- 4 pm AEDT | Submitting environmental DNA (eDNA) data | Environmental DNA (eDNA) | Multiple methods in development | **Learning outcomes:** By the end of each workshop you should be able to: * Identify the importance of data sharing * Outline the purpose of the ENA * Explain the ENA Metadata Model and the importance of metadata * Describe the data submission routes at the ENA * Identify the range of tools and services offered by the ENA for data submission * Submit the demonstrated data type using the ENA submission route shown in the workshop(s) you attend **Location:** Online via Zoom. **Date/Time:** 25 March to 3 April 2025\. All times are provided in AEDT (Melbourne). [Check the start time at your location](https://www.timeanddate.com/worldclock/fixedtime.html?ah=3&iso=20250325T13&msg=ENA%20workshop%20miniseries&p1=152). **Lead Trainers:** Maira Ihsan, User Support Bioinformatician, European Nucleotide Archive, EMBL-European Bioinformatics Institute Dr Joana Pauperio, Biodiversity Curator, European Nucleotide Archive, EMBL-European Bioinformatics Institute **Who these workshops are for:** This series of related workshops is for Australian-based life scientists and bioinformaticians who are working with nucleotide sequencing data and who would benefit from submitting their data to the INSDC. **Prerequisites:** You must be associated with an Australian organisation to participate in these workshops. Interactive submission routes: none Programmatic submission routes: some understanding of XML and JSON file formats is recommended Command line submission route: a basic understanding of how to interact with the command line is required **How to join:** [**Register here**](https://ena-data-submission.eventbrite.com.au/) Attendance at these workshops is fully subsidised, but registrations are essential. You can apply to attend one or more workshops \- choose the workshop(s) most relevant to you on the registration form. Details on how to join and essential preparation steps will be provided closer to the date of the workshops. *This event is part of a series of [bioinformatics training events](https://www.biocommons.org.au/webinars-workshops). If you’d like to hear when registrations open for other events, please [subscribe](https://www.biocommons.org.au/subscribe) to the Australian BioCommons newsletter.* 2025-03-24 09:00:00 UTC 2025-04-04 17:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all []

  • WORKSHOP: Retrieving nucleotide sequencing data from the European Nucleotide Archive

    3 April 2025

    WORKSHOP: Retrieving nucleotide sequencing data from the European Nucleotide Archive https://dresa.org.au/events/workshop-retrieving-nucleotide-sequencing-data-from-the-european-nucleotide-archive The European Nucleotide Archive (ENA) is the European node of the International Nucleotide Sequence Database Collaboration (INSDC), providing a comprehensive record of the world’s nucleotide sequencing information, covering raw read sequencing data, sequence assembly information and functional annotation. The three INSDC members (ENA, NCBI-SRA and DDBJ-SRA) routinely exchange data which ensures nucleotide data is archived and shared across geographically dispersed locations (Europe, USA and Japan). The ENA is provided by EMBL’s European Bioinformatics Institute, EMBL-EBI. This workshop provides an introduction to the ENA data and metadata model and data retrieval tools, followed by an opportunity to practice retrieving a range of different data types from the ENA using a variety of tools and protocols. **Learning outcomes:** By the end of this workshop you should be able to: * Outline the ENA data and metadata standards * Identify the metadata fields associated with different data types submitted to the INSDC * Build queries based on the datasets you would like to retrieve * Describe of the range of tools offered by the ENA to download data files * Practice data retrieval using the ENA advanced search **Location:** Online via Zoom. **Date/Time:** Thursday 3 April 2025, 1 \- 3 pm AEDT / 12 \- 2 pm AEST / 12:30 \- 2:30 pm ACDT / 10 am \- 12 pm AWST. [Check the start time at your location](https://www.timeanddate.com/worldclock/fixedtime.html?ah=2&iso=20250403T13&msg=WORKSHOP%3A%20Retrieving%20nucleotide%20sequencing%20data%20from%20the%20European%20Nucleotide%20Archive&p1=152). **Lead Trainers:** * Dr Joana Pauperio, Biodiversity Curator, European Nucleotide Archive, EMBL-European Bioinformatics Institute * Maira Ihsan, User Support Bioinformatician, European Nucleotide Archive, EMBL-European Bioinformatics Institute **Who this workshop is for:** This workshop is for Australian life science researchers and bioinformaticians working with nucleotide sequencing data. It is suitable for researchers who are interested in accessing, downloading and using data retrieved from the ENA. **Prerequisites:** You must be associated with an Australian organisation to participate in this workshop. **How to join:** [**Register here**](https://ena-data-retrieval.eventbrite.com.au/) Attendance at this workshop is fully subsidised, but registrations are essential. Details on how to join and essential preparation steps will be provided closer to the date of the workshop. *This event is part of a series of [bioinformatics training events](https://www.biocommons.org.au/webinars-workshops). If you’d like to hear when registrations open for other events, please [subscribe](https://www.biocommons.org.au/subscribe) to the Australian BioCommons newsletter.* 2025-04-03 13:00:00 UTC 2025-04-03 15:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all []

  • WEBINAR: Deciphering AI for the Life Sciences

    18 March 2025

    WEBINAR: Deciphering AI for the Life Sciences https://dresa.org.au/events/webinar-deciphering-ai-for-the-life-sciences Curious about how Artificial Intelligence (AI) is transforming life sciences? AI is reshaping life sciences by enabling researchers to analyse complex datasets, automate workflows, and gain deeper insights into biological processes. This introductory webinar will break down AI concepts, clarify key terminology, and showcase real-world examples of AI applications in the life sciences. **Learning outcomes** This webinar, will help you: - Define key AI-related terms - Understand the historical progression of AI and how it has evolved to impact life sciences - Recognise key AI applications in specific life science domains - Understand the benefits and limitations of AI - Navigate available learning resources to explore AI further **Speakers**: Dr Benjamin Goudey, AI Technical Lead, Australian BioCommons **Date/Time**: 18 March 2024, 12 - 1 pm AEDT/ 11am - 12 pm AEST / 11:30am - 12:30 pm ACDT / 9 - 10 am AWST [check in your timezone](https://www.timeanddate.com/worldclock/fixedtime.html?msg=Deciphering+AI+for+the+Life+Sciences&iso=20250318T12&p1=152&ah=1) **Who the webinar is for**: - Wet lab scientists with minimal computational background and eager to apply AI to their experimental workflows; - Bioinformaticians/computational scientists with some programming experience but new to AI, interested in integrating AI in their pipelines; - Research leads and decision-makers interested in the strategic impact of AI. **How to join**: This webinar is free to join but you must register for a place in advance. [Register here](https://unimelb.zoom.us/webinar/register/WN_fdkrX7C3Q1qn21W1MSFXDA) 2025-03-18 12:00:00 UTC 2025-03-18 13:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all BioinformaticsIntroductoryAILife Science

  • WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive

    24 March - 4 April 2025

    WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive https://dresa.org.au/events/workshop-series-submitting-sequencing-data-and-genome-assemblies-to-the-european-nucleotide-archive The European Nucleotide Archive (ENA) is the European node of the International Nucleotide Sequence Database Collaboration (INSDC), providing a comprehensive record of the world’s nucleotide sequencing information, covering raw sequencing data, sequence assembly information and functional annotation. The three INSDC members (ENA, NCBI-SRA and DDBJ-SRA) routinely exchange data which ensures nucleotide data is archived and shared across geographically dispersed locations (Europe, USA and Japan). The ENA is provided by EMBL’s European Bioinformatics Institute, EMBL-EBI. ENA team members Dr Joana Pauperio and Maira Ihsan will deliver a series of related workshops on submitting raw read sequencing, Metagenome-Assembled Genome (MAG), environmental DNA (eDNA) and genome assembly and annotation data to ENA.* Each workshop will begin with an introduction to the ENA data and metadata model. You will then be guided through hands-on exercises using example data sets to practice data submission via one of three submission routes: Interactive web-based submission: these are completed by filling out web forms in your browser and downloading template spreadsheets that can be completed off-line and uploaded to ENA. Command-line based submission: Data submissions of this type are completed via the command line using ENA's bespoke Webin-CLI program. This validates your submissions entirely before you complete them, allowing you maximum control of the process. Webin-CLI is the only way to submit assembled genomes and transcriptomes. Programmatic submission: these are completed by preparing your submissions as XML/JSON documents and either sending them to ENA using a program such as cURL or using ENA's Webin Portal. *This series is designed with flexibility in mind. You can apply to attend one or more workshops \- choose the workshop(s) most relevant to you.* | Date/Time | Workshop title| Dataset | Submission route | | ----- | ----- | ----- | ----- | | 25 March 2025 1 \- 4 pm AEDT | Submitting raw read sequencing data using interactive web-based tools | Raw reads | Interactive web-based submission | | 26 March 2025 1 \- 4 pm AEDT | Submitting raw read sequencing data using programmatic tools | Raw reads | Programmatic submission | | 27 March 2025 1 \- 3 pm AEDT | Submitting raw-read sequencing data using command line based tools | Raw reads | Command-line submission | | 31 March 2025 1 \- 4 pm AEDT | Submitting genome assembly and annotation data using the command line | Genome assembly and annotation data | Command-line submission | | 1 April 2025 1 \- 4 pm AEDT | Submitting Metagenome-Assembled Genome (MAG) data to ENA and MGNify using the command line | Metagenome-Assembled Genome (MAG) | Command-line submission | | 2 April 2025 1 \- 4 pm AEDT | Submitting environmental DNA (eDNA) data | Environmental DNA (eDNA) | Multiple methods in development | **Learning outcomes:** By the end of each workshop you should be able to: * Identify the importance of data sharing * Outline the purpose of the ENA * Explain the ENA Metadata Model and the importance of metadata * Describe the data submission routes at the ENA * Identify the range of tools and services offered by the ENA for data submission * Submit the demonstrated data type using the ENA submission route shown in the workshop(s) you attend **Location:** Online via Zoom. **Date/Time:** 25 March to 3 April 2025\. All times are provided in AEDT (Melbourne). [Check the start time at your location](https://www.timeanddate.com/worldclock/fixedtime.html?ah=3&iso=20250325T13&msg=ENA%20workshop%20miniseries&p1=152). **Lead Trainers:** Maira Ihsan, User Support Bioinformatician, European Nucleotide Archive, EMBL-European Bioinformatics Institute Dr Joana Pauperio, Biodiversity Curator, European Nucleotide Archive, EMBL-European Bioinformatics Institute **Who these workshops are for:** This series of related workshops is for Australian-based life scientists and bioinformaticians who are working with nucleotide sequencing data and who would benefit from submitting their data to the INSDC. **Prerequisites:** You must be associated with an Australian organisation to participate in these workshops. Interactive submission routes: none Programmatic submission routes: some understanding of XML and JSON file formats is recommended Command line submission route: a basic understanding of how to interact with the command line is required **How to join:** [**Register here**](https://ena-data-submission.eventbrite.com.au/) Attendance at these workshops is fully subsidised, but registrations are essential. You can apply to attend one or more workshops \- choose the workshop(s) most relevant to you on the registration form. Details on how to join and essential preparation steps will be provided closer to the date of the workshops. *This event is part of a series of [bioinformatics training events](https://www.biocommons.org.au/webinars-workshops). If you’d like to hear when registrations open for other events, please [subscribe](https://www.biocommons.org.au/subscribe) to the Australian BioCommons newsletter.* 2025-03-24 09:00:00 UTC 2025-04-04 17:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all []

  • WORKSHOP: Retrieving nucleotide sequencing data from the European Nucleotide Archive

    3 April 2025

    WORKSHOP: Retrieving nucleotide sequencing data from the European Nucleotide Archive https://dresa.org.au/events/workshop-retrieving-nucleotide-sequencing-data-from-the-european-nucleotide-archive The European Nucleotide Archive (ENA) is the European node of the International Nucleotide Sequence Database Collaboration (INSDC), providing a comprehensive record of the world’s nucleotide sequencing information, covering raw read sequencing data, sequence assembly information and functional annotation. The three INSDC members (ENA, NCBI-SRA and DDBJ-SRA) routinely exchange data which ensures nucleotide data is archived and shared across geographically dispersed locations (Europe, USA and Japan). The ENA is provided by EMBL’s European Bioinformatics Institute, EMBL-EBI. This workshop provides an introduction to the ENA data and metadata model and data retrieval tools, followed by an opportunity to practice retrieving a range of different data types from the ENA using a variety of tools and protocols. **Learning outcomes:** By the end of this workshop you should be able to: * Outline the ENA data and metadata standards * Identify the metadata fields associated with different data types submitted to the INSDC * Build queries based on the datasets you would like to retrieve * Describe of the range of tools offered by the ENA to download data files * Practice data retrieval using the ENA advanced search **Location:** Online via Zoom. **Date/Time:** Thursday 3 April 2025, 1 \- 3 pm AEDT / 12 \- 2 pm AEST / 12:30 \- 2:30 pm ACDT / 10 am \- 12 pm AWST. [Check the start time at your location](https://www.timeanddate.com/worldclock/fixedtime.html?ah=2&iso=20250403T13&msg=WORKSHOP%3A%20Retrieving%20nucleotide%20sequencing%20data%20from%20the%20European%20Nucleotide%20Archive&p1=152). **Lead Trainers:** * Dr Joana Pauperio, Biodiversity Curator, European Nucleotide Archive, EMBL-European Bioinformatics Institute * Maira Ihsan, User Support Bioinformatician, European Nucleotide Archive, EMBL-European Bioinformatics Institute **Who this workshop is for:** This workshop is for Australian life science researchers and bioinformaticians working with nucleotide sequencing data. It is suitable for researchers who are interested in accessing, downloading and using data retrieved from the ENA. **Prerequisites:** You must be associated with an Australian organisation to participate in this workshop. **How to join:** [**Register here**](https://ena-data-retrieval.eventbrite.com.au/) Attendance at this workshop is fully subsidised, but registrations are essential. Details on how to join and essential preparation steps will be provided closer to the date of the workshop. *This event is part of a series of [bioinformatics training events](https://www.biocommons.org.au/webinars-workshops). If you’d like to hear when registrations open for other events, please [subscribe](https://www.biocommons.org.au/subscribe) to the Australian BioCommons newsletter.* 2025-04-03 13:00:00 UTC 2025-04-03 15:00:00 UTC Australian BioCommons Online, Australia Online Australia Australian BioCommons training@biocommons.org.au [] [] [] open_to_all []

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